A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
1.0
nTPM
Monaco:
10.5
nTPM
Schmiedel:
10.0
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
1.0
HPA sample
nTPM
Memory B-cell nTPM: 1.0
Samples: 6
Max nTPM: 3.0
Min nTPM: 0.1
P10809_1017
1.1
P10809_1025
0.2
P10809_1044
0.9
P10809_1063
0.7
P10809_1092
3.0
P10809_1105
0.1
Naive B-cell nTPM: 0.9
Samples: 6
Max nTPM: 1.7
Min nTPM: 0.0
P10809_1011
1.7
P10809_1029
1.6
P10809_1048
0.0
P10809_1067
0.0
P10809_1091
1.1
P10809_1104
0.9
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
10.5
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 1.1
Samples: 4
Max nTPM: 2.5
Min nTPM: 0.2
RHH5310_R3677
0.2
RHH5218_R3590
2.5
RHH5247_R3619
0.7
RHH5276_R3648
0.9
Naive B-cell nTPM: 10.5
Samples: 4
Max nTPM: 24.2
Min nTPM: 0.1
RHH5308_R3675
8.4
RHH5216_R3588
0.1
RHH5245_R3617
24.2
RHH5274_R3646
9.3
Non-switched memory B-cell nTPM: 8.5
Samples: 4
Max nTPM: 10.7
Min nTPM: 6.6
RHH5309_R3676
6.6
RHH5217_R3589
7.6
RHH5246_R3618
8.9
RHH5275_R3647
10.7
Plasmablast nTPM: 0.0
Samples: 4
Max nTPM: 0.1
Min nTPM: 0.0
RHH5312_R3679
0.0
RHH5220_R3592
0.0
RHH5249_R3621
0.0
RHH5278_R3650
0.1
Switched memory B-cell nTPM: 2.3
Samples: 4
Max nTPM: 4.7
Min nTPM: 0.0
RHH5311_R3678
0.0
RHH5219_R3591
4.7
RHH5248_R3620
0.4
RHH5277_R3649
3.9
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
10.0
Schmiedel sample id
TPM
Naive B-cell TPM: 10.0
Samples: 91
Max TPM: 29.1
Min TPM: 2.1
B_CELL_NAIVE_1
29.1
B_CELL_NAIVE_2
23.0
B_CELL_NAIVE_3
20.9
B_CELL_NAIVE_4
19.3
B_CELL_NAIVE_5
18.8
B_CELL_NAIVE_6
17.9
B_CELL_NAIVE_7
17.7
B_CELL_NAIVE_8
17.4
B_CELL_NAIVE_9
16.8
B_CELL_NAIVE_10
16.7
B_CELL_NAIVE_11
16.1
B_CELL_NAIVE_12
15.9
B_CELL_NAIVE_13
14.8
B_CELL_NAIVE_14
14.7
B_CELL_NAIVE_15
14.5
B_CELL_NAIVE_16
14.5
B_CELL_NAIVE_17
13.9
B_CELL_NAIVE_18
13.8
B_CELL_NAIVE_19
13.2
B_CELL_NAIVE_20
12.9
B_CELL_NAIVE_21
12.7
B_CELL_NAIVE_22
12.2
B_CELL_NAIVE_23
12.1
B_CELL_NAIVE_24
12.0
B_CELL_NAIVE_25
12.0
B_CELL_NAIVE_26
11.8
B_CELL_NAIVE_27
11.4
B_CELL_NAIVE_28
11.4
B_CELL_NAIVE_29
11.2
B_CELL_NAIVE_30
10.8
B_CELL_NAIVE_31
10.7
B_CELL_NAIVE_32
10.7
B_CELL_NAIVE_33
10.6
B_CELL_NAIVE_34
10.6
B_CELL_NAIVE_35
10.6
B_CELL_NAIVE_36
10.4
B_CELL_NAIVE_37
10.4
B_CELL_NAIVE_38
9.9
B_CELL_NAIVE_39
9.8
B_CELL_NAIVE_40
9.8
B_CELL_NAIVE_41
9.6
B_CELL_NAIVE_42
9.5
B_CELL_NAIVE_43
9.2
B_CELL_NAIVE_44
8.9
B_CELL_NAIVE_45
8.9
B_CELL_NAIVE_46
8.8
B_CELL_NAIVE_47
8.8
B_CELL_NAIVE_48
8.8
B_CELL_NAIVE_49
8.7
B_CELL_NAIVE_50
8.7
B_CELL_NAIVE_51
8.6
B_CELL_NAIVE_52
8.6
B_CELL_NAIVE_53
8.5
B_CELL_NAIVE_54
8.4
B_CELL_NAIVE_55
8.4
B_CELL_NAIVE_56
8.3
B_CELL_NAIVE_57
8.3
B_CELL_NAIVE_58
8.2
B_CELL_NAIVE_59
7.9
B_CELL_NAIVE_60
7.8
B_CELL_NAIVE_61
7.7
B_CELL_NAIVE_62
7.7
B_CELL_NAIVE_63
7.5
B_CELL_NAIVE_64
7.2
B_CELL_NAIVE_65
7.2
B_CELL_NAIVE_66
6.6
B_CELL_NAIVE_67
6.6
B_CELL_NAIVE_68
6.6
B_CELL_NAIVE_69
6.5
B_CELL_NAIVE_70
6.5
B_CELL_NAIVE_71
6.4
B_CELL_NAIVE_72
6.3
B_CELL_NAIVE_73
6.2
B_CELL_NAIVE_74
6.0
B_CELL_NAIVE_75
5.9
B_CELL_NAIVE_76
5.9
B_CELL_NAIVE_77
5.6
B_CELL_NAIVE_78
5.6
B_CELL_NAIVE_79
5.5
B_CELL_NAIVE_80
5.1
B_CELL_NAIVE_81
5.1
B_CELL_NAIVE_82
4.8
B_CELL_NAIVE_83
4.6
B_CELL_NAIVE_84
4.6
B_CELL_NAIVE_85
4.5
B_CELL_NAIVE_86
4.2
B_CELL_NAIVE_87
4.0
B_CELL_NAIVE_88
2.9
B_CELL_NAIVE_89
2.5
B_CELL_NAIVE_90
2.5
B_CELL_NAIVE_91
2.1
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