A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
0.2
nTPM
Monaco:
75.8
nTPM
Schmiedel:
64.4
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
0.2
HPA sample
nTPM
NK-cell nTPM: 0.2
Samples: 6
Max nTPM: 0.9
Min nTPM: 0.0
P10809_1013
0.9
P10809_1033
0.1
P10809_1052
0.0
P10809_1071
0.0
P10809_1093
0.0
P10809_1103
0.0
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
75.8
Monaco sample
nTPM
NK-cell nTPM: 75.8
Samples: 4
Max nTPM: 134.8
Min nTPM: 27.7
RHH5316_R3683
109.3
RHH5224_R3596
27.7
RHH5253_R3625
134.8
RHH5282_R3654
31.2
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
64.4
Schmiedel sample id
TPM
NK-cell TPM: 64.4
Samples: 90
Max TPM: 159.4
Min TPM: 22.1
NK_1
159.4
NK_2
143.3
NK_3
140.7
NK_4
125.0
NK_5
111.8
NK_6
108.6
NK_7
107.4
NK_8
107.1
NK_9
104.0
NK_10
103.8
NK_11
97.3
NK_12
93.1
NK_13
92.4
NK_14
88.6
NK_15
85.0
NK_16
84.6
NK_17
84.6
NK_18
81.5
NK_19
81.1
NK_20
80.3
NK_21
80.2
NK_22
79.2
NK_23
78.7
NK_24
77.9
NK_25
77.4
NK_26
77.2
NK_27
76.2
NK_28
74.4
NK_29
73.8
NK_30
71.0
NK_31
71.0
NK_32
68.6
NK_33
68.6
NK_34
68.4
NK_35
68.3
NK_36
67.9
NK_37
67.5
NK_38
65.6
NK_39
64.7
NK_40
63.0
NK_41
62.8
NK_42
62.5
NK_43
62.4
NK_44
61.7
NK_45
60.8
NK_46
59.7
NK_47
57.0
NK_48
56.9
NK_49
56.4
NK_50
56.3
NK_51
56.2
NK_52
56.2
NK_53
56.0
NK_54
54.6
NK_55
54.6
NK_56
54.5
NK_57
53.4
NK_58
52.8
NK_59
51.6
NK_60
51.4
NK_61
50.2
NK_62
50.1
NK_63
49.9
NK_64
48.4
NK_65
45.6
NK_66
44.5
NK_67
44.3
NK_68
44.0
NK_69
43.9
NK_70
43.3
NK_71
42.7
NK_72
41.6
NK_73
41.1
NK_74
39.1
NK_75
38.3
NK_76
38.2
NK_77
37.7
NK_78
34.5
NK_79
34.5
NK_80
34.0
NK_81
33.8
NK_82
33.1
NK_83
33.1
NK_84
31.3
NK_85
31.2
NK_86
30.3
NK_87
30.2
NK_88
23.3
NK_89
22.2
NK_90
22.1
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