A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
31.8
nTPM
Monaco:
170.3
nTPM
Schmiedel:
36.8
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
31.8
HPA sample
nTPM
Memory B-cell nTPM: 30.9
Samples: 6
Max nTPM: 51.2
Min nTPM: 5.3
P10809_1017
51.2
P10809_1025
35.1
P10809_1044
5.3
P10809_1063
26.4
P10809_1092
30.4
P10809_1105
36.9
Naive B-cell nTPM: 31.8
Samples: 6
Max nTPM: 49.9
Min nTPM: 17.2
P10809_1011
49.9
P10809_1029
30.7
P10809_1048
17.2
P10809_1067
24.1
P10809_1091
30.3
P10809_1104
38.6
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
170.3
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 170.4
Samples: 4
Max nTPM: 192.5
Min nTPM: 143.7
RHH5310_R3677
182.4
RHH5218_R3590
162.8
RHH5247_R3619
143.7
RHH5276_R3648
192.5
Naive B-cell nTPM: 159.1
Samples: 4
Max nTPM: 191.2
Min nTPM: 111.4
RHH5308_R3675
160.5
RHH5216_R3588
173.4
RHH5245_R3617
191.2
RHH5274_R3646
111.4
Non-switched memory B-cell nTPM: 162.2
Samples: 4
Max nTPM: 194.0
Min nTPM: 133.6
RHH5309_R3676
151.5
RHH5217_R3589
194.0
RHH5246_R3618
133.6
RHH5275_R3647
169.8
Plasmablast nTPM: 142.2
Samples: 4
Max nTPM: 160.7
Min nTPM: 108.4
RHH5312_R3679
150.1
RHH5220_R3592
108.4
RHH5249_R3621
149.6
RHH5278_R3650
160.7
Switched memory B-cell nTPM: 165.8
Samples: 4
Max nTPM: 180.1
Min nTPM: 142.8
RHH5311_R3678
169.8
RHH5219_R3591
170.4
RHH5248_R3620
180.1
RHH5277_R3649
142.8
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
36.8
Schmiedel sample id
TPM
Naive B-cell TPM: 36.8
Samples: 91
Max TPM: 58.9
Min TPM: 8.8
B_CELL_NAIVE_1
58.9
B_CELL_NAIVE_2
58.8
B_CELL_NAIVE_3
57.1
B_CELL_NAIVE_4
56.6
B_CELL_NAIVE_5
56.2
B_CELL_NAIVE_6
55.3
B_CELL_NAIVE_7
53.4
B_CELL_NAIVE_8
52.9
B_CELL_NAIVE_9
52.7
B_CELL_NAIVE_10
51.8
B_CELL_NAIVE_11
51.7
B_CELL_NAIVE_12
50.8
B_CELL_NAIVE_13
50.1
B_CELL_NAIVE_14
50.0
B_CELL_NAIVE_15
49.9
B_CELL_NAIVE_16
49.9
B_CELL_NAIVE_17
49.7
B_CELL_NAIVE_18
49.3
B_CELL_NAIVE_19
49.2
B_CELL_NAIVE_20
47.5
B_CELL_NAIVE_21
47.1
B_CELL_NAIVE_22
46.8
B_CELL_NAIVE_23
46.6
B_CELL_NAIVE_24
46.4
B_CELL_NAIVE_25
46.1
B_CELL_NAIVE_26
45.9
B_CELL_NAIVE_27
45.2
B_CELL_NAIVE_28
44.0
B_CELL_NAIVE_29
43.9
B_CELL_NAIVE_30
43.7
B_CELL_NAIVE_31
42.6
B_CELL_NAIVE_32
42.1
B_CELL_NAIVE_33
42.0
B_CELL_NAIVE_34
41.8
B_CELL_NAIVE_35
41.7
B_CELL_NAIVE_36
41.1
B_CELL_NAIVE_37
40.8
B_CELL_NAIVE_38
40.4
B_CELL_NAIVE_39
39.8
B_CELL_NAIVE_40
39.6
B_CELL_NAIVE_41
39.6
B_CELL_NAIVE_42
39.2
B_CELL_NAIVE_43
39.2
B_CELL_NAIVE_44
38.8
B_CELL_NAIVE_45
38.8
B_CELL_NAIVE_46
38.6
B_CELL_NAIVE_47
38.4
B_CELL_NAIVE_48
37.9
B_CELL_NAIVE_49
37.4
B_CELL_NAIVE_50
37.2
B_CELL_NAIVE_51
36.6
B_CELL_NAIVE_52
36.6
B_CELL_NAIVE_53
36.4
B_CELL_NAIVE_54
35.3
B_CELL_NAIVE_55
35.3
B_CELL_NAIVE_56
34.3
B_CELL_NAIVE_57
34.1
B_CELL_NAIVE_58
34.0
B_CELL_NAIVE_59
33.9
B_CELL_NAIVE_60
32.8
B_CELL_NAIVE_61
32.7
B_CELL_NAIVE_62
32.6
B_CELL_NAIVE_63
32.5
B_CELL_NAIVE_64
31.0
B_CELL_NAIVE_65
29.3
B_CELL_NAIVE_66
29.2
B_CELL_NAIVE_67
28.7
B_CELL_NAIVE_68
28.3
B_CELL_NAIVE_69
27.8
B_CELL_NAIVE_70
27.2
B_CELL_NAIVE_71
26.1
B_CELL_NAIVE_72
26.1
B_CELL_NAIVE_73
26.0
B_CELL_NAIVE_74
25.4
B_CELL_NAIVE_75
24.2
B_CELL_NAIVE_76
24.1
B_CELL_NAIVE_77
23.0
B_CELL_NAIVE_78
22.8
B_CELL_NAIVE_79
22.1
B_CELL_NAIVE_80
19.7
B_CELL_NAIVE_81
19.6
B_CELL_NAIVE_82
17.3
B_CELL_NAIVE_83
17.2
B_CELL_NAIVE_84
15.1
B_CELL_NAIVE_85
15.0
B_CELL_NAIVE_86
13.6
B_CELL_NAIVE_87
13.5
B_CELL_NAIVE_88
12.2
B_CELL_NAIVE_89
12.1
B_CELL_NAIVE_90
10.1
B_CELL_NAIVE_91
8.8
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