A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
57.6
nTPM
Monaco:
238.6
nTPM
Schmiedel:
53.7
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
57.6
HPA sample
nTPM
Classical monocyte nTPM: 57.6
Samples: 6
Max nTPM: 131.3
Min nTPM: 26.1
P10809_1003
131.3
P10809_1020
47.5
P10809_1039
26.1
P10809_1058
38.8
P10809_1080
49.3
P10809_1107
52.3
Intermediate monocyte nTPM: 51.2
Samples: 6
Max nTPM: 78.3
Min nTPM: 32.0
P10809_1004
78.3
P10809_1023
53.3
P10809_1042
52.6
P10809_1061
41.9
P10809_1081
32.0
P10809_1108
48.9
Non-classical monocyte nTPM: 30.5
Samples: 5
Max nTPM: 76.6
Min nTPM: 0.2
P10809_1005
76.6
P10809_1053
30.8
P10809_1072
0.2
P10809_1082
20.1
P10809_1109
24.7
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
238.6
Monaco sample
nTPM
Classical monocyte nTPM: 238.6
Samples: 4
Max nTPM: 253.3
Min nTPM: 210.7
RHH5313_R3680
247.1
RHH5221_R3593
253.3
RHH5250_R3622
243.4
RHH5279_R3651
210.7
Intermediate monocyte nTPM: 195.5
Samples: 4
Max nTPM: 275.8
Min nTPM: 151.3
RHH5314_R3681
197.1
RHH5222_R3594
275.8
RHH5251_R3623
151.3
RHH5280_R3652
157.9
Non-classical monocyte nTPM: 147.9
Samples: 4
Max nTPM: 155.1
Min nTPM: 134.5
RHH5315_R3682
154.2
RHH5223_R3595
147.7
RHH5252_R3624
155.1
RHH5281_R3653
134.5
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
53.7
Schmiedel sample id
TPM
Classical monocyte TPM: 53.7
Samples: 91
Max TPM: 83.0
Min TPM: 26.9
MONOCYTES_1
83.0
MONOCYTES_2
83.0
MONOCYTES_3
78.3
MONOCYTES_4
77.1
MONOCYTES_5
76.7
MONOCYTES_6
76.3
MONOCYTES_7
74.8
MONOCYTES_8
74.6
MONOCYTES_9
74.6
MONOCYTES_10
70.4
MONOCYTES_11
70.4
MONOCYTES_12
70.2
MONOCYTES_13
70.0
MONOCYTES_14
70.0
MONOCYTES_15
69.5
MONOCYTES_16
69.3
MONOCYTES_17
68.3
MONOCYTES_18
68.2
MONOCYTES_19
68.0
MONOCYTES_20
67.7
MONOCYTES_21
65.4
MONOCYTES_22
63.8
MONOCYTES_23
63.6
MONOCYTES_24
62.3
MONOCYTES_25
62.2
MONOCYTES_26
61.6
MONOCYTES_27
61.5
MONOCYTES_28
61.3
MONOCYTES_29
61.3
MONOCYTES_30
61.2
MONOCYTES_31
61.1
MONOCYTES_32
60.6
MONOCYTES_33
60.4
MONOCYTES_34
60.4
MONOCYTES_35
59.7
MONOCYTES_36
58.8
MONOCYTES_37
58.2
MONOCYTES_38
56.8
MONOCYTES_39
56.8
MONOCYTES_40
54.7
MONOCYTES_41
54.4
MONOCYTES_42
54.2
MONOCYTES_43
54.1
MONOCYTES_44
53.2
MONOCYTES_45
53.2
MONOCYTES_46
52.9
MONOCYTES_47
52.5
MONOCYTES_48
51.3
MONOCYTES_49
51.1
MONOCYTES_50
50.6
MONOCYTES_51
50.1
MONOCYTES_52
49.4
MONOCYTES_53
49.4
MONOCYTES_54
49.2
MONOCYTES_55
49.2
MONOCYTES_56
49.0
MONOCYTES_57
48.8
MONOCYTES_58
47.6
MONOCYTES_59
47.5
MONOCYTES_60
46.6
MONOCYTES_61
46.5
MONOCYTES_62
46.5
MONOCYTES_63
46.2
MONOCYTES_64
46.0
MONOCYTES_65
45.9
MONOCYTES_66
45.9
MONOCYTES_67
45.9
MONOCYTES_68
45.1
MONOCYTES_69
44.0
MONOCYTES_70
43.3
MONOCYTES_71
43.1
MONOCYTES_72
42.8
MONOCYTES_73
42.4
MONOCYTES_74
42.1
MONOCYTES_75
41.1
MONOCYTES_76
40.9
MONOCYTES_77
40.6
MONOCYTES_78
39.6
MONOCYTES_79
38.0
MONOCYTES_80
36.0
MONOCYTES_81
33.7
MONOCYTES_82
33.0
MONOCYTES_83
32.8
MONOCYTES_84
31.7
MONOCYTES_85
30.7
MONOCYTES_86
30.2
MONOCYTES_87
30.2
MONOCYTES_88
29.2
MONOCYTES_89
28.6
MONOCYTES_90
27.7
MONOCYTES_91
26.9
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Non-classical monocyte TPM: 31.1
Samples: 90
Max TPM: 55.7
Min TPM: 7.7
M2_1
55.7
M2_2
55.0
M2_3
54.2
M2_4
52.9
M2_5
48.5
M2_6
46.9
M2_7
46.5
M2_8
46.4
M2_9
46.2
M2_10
45.5
M2_11
45.1
M2_12
44.6
M2_13
44.5
M2_14
42.2
M2_15
42.0
M2_16
41.7
M2_17
41.4
M2_18
39.7
M2_19
39.7
M2_20
39.1
M2_21
39.1
M2_22
39.0
M2_23
38.9
M2_24
38.5
M2_25
38.5
M2_26
38.0
M2_27
37.3
M2_28
37.1
M2_29
37.0
M2_30
36.8
M2_31
36.7
M2_32
36.3
M2_33
35.9
M2_34
35.9
M2_35
35.7
M2_36
35.4
M2_37
35.4
M2_38
35.3
M2_39
34.1
M2_40
34.0
M2_41
33.6
M2_42
33.2
M2_43
32.8
M2_44
32.0
M2_45
32.0
M2_46
31.7
M2_47
31.7
M2_48
30.2
M2_49
30.1
M2_50
29.9
M2_51
29.7
M2_52
29.6
M2_53
28.5
M2_54
28.4
M2_55
28.2
M2_56
28.0
M2_57
27.9
M2_58
27.0
M2_59
26.8
M2_60
26.1
M2_61
26.0
M2_62
25.3
M2_63
24.9
M2_64
24.7
M2_65
24.6
M2_66
24.6
M2_67
24.6
M2_68
24.0
M2_69
23.8
M2_70
23.0
M2_71
21.4
M2_72
21.0
M2_73
20.6
M2_74
18.7
M2_75
17.9
M2_76
16.6
M2_77
16.2
M2_78
16.1
M2_79
15.7
M2_80
15.5
M2_81
15.2
M2_82
15.0
M2_83
14.6
M2_84
14.3
M2_85
14.2
M2_86
13.2
M2_87
11.8
M2_88
10.4
M2_89
9.9
M2_90
7.7
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