A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
0.8
nTPM
Monaco:
4.8
nTPM
Schmiedel:
30.5
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
0.8
HPA sample
nTPM
NK-cell nTPM: 0.8
Samples: 6
Max nTPM: 1.5
Min nTPM: 0.0
P10809_1013
0.4
P10809_1033
1.2
P10809_1052
1.0
P10809_1071
0.5
P10809_1093
0.0
P10809_1103
1.5
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
4.8
Monaco sample
nTPM
NK-cell nTPM: 4.8
Samples: 4
Max nTPM: 5.7
Min nTPM: 3.9
RHH5316_R3683
4.8
RHH5224_R3596
5.7
RHH5253_R3625
3.9
RHH5282_R3654
4.8
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
30.5
Schmiedel sample id
TPM
NK-cell TPM: 30.5
Samples: 90
Max TPM: 44.2
Min TPM: 16.5
NK_1
44.2
NK_2
42.2
NK_3
39.4
NK_4
39.1
NK_5
39.1
NK_6
38.8
NK_7
38.2
NK_8
38.0
NK_9
37.7
NK_10
37.6
NK_11
36.6
NK_12
36.2
NK_13
36.2
NK_14
35.9
NK_15
35.8
NK_16
35.4
NK_17
35.2
NK_18
35.0
NK_19
34.8
NK_20
34.8
NK_21
34.7
NK_22
34.7
NK_23
34.6
NK_24
34.6
NK_25
34.6
NK_26
34.4
NK_27
34.0
NK_28
33.9
NK_29
33.5
NK_30
32.4
NK_31
32.0
NK_32
31.8
NK_33
31.7
NK_34
31.6
NK_35
31.5
NK_36
31.5
NK_37
31.4
NK_38
31.3
NK_39
31.0
NK_40
30.5
NK_41
30.4
NK_42
30.4
NK_43
30.1
NK_44
30.1
NK_45
30.1
NK_46
30.0
NK_47
29.6
NK_48
29.5
NK_49
29.4
NK_50
29.3
NK_51
29.1
NK_52
29.1
NK_53
29.1
NK_54
29.0
NK_55
29.0
NK_56
28.9
NK_57
28.8
NK_58
28.8
NK_59
28.7
NK_60
28.5
NK_61
28.4
NK_62
28.1
NK_63
28.1
NK_64
27.3
NK_65
27.2
NK_66
27.0
NK_67
27.0
NK_68
26.8
NK_69
26.7
NK_70
26.5
NK_71
26.3
NK_72
26.2
NK_73
26.2
NK_74
26.1
NK_75
26.0
NK_76
26.0
NK_77
25.7
NK_78
25.3
NK_79
25.0
NK_80
24.5
NK_81
23.9
NK_82
23.6
NK_83
22.9
NK_84
22.6
NK_85
22.1
NK_86
21.8
NK_87
21.7
NK_88
21.6
NK_89
20.7
NK_90
16.5
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