A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
1.0
nTPM
Monaco:
5.3
nTPM
Schmiedel:
17.9
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
1.0
HPA sample
nTPM
Classical monocyte nTPM: 0.8
Samples: 6
Max nTPM: 1.1
Min nTPM: 0.5
P10809_1003
0.9
P10809_1020
1.1
P10809_1039
0.5
P10809_1058
0.7
P10809_1080
0.8
P10809_1107
0.7
Intermediate monocyte nTPM: 0.8
Samples: 6
Max nTPM: 1.1
Min nTPM: 0.4
P10809_1004
1.1
P10809_1023
1.0
P10809_1042
0.6
P10809_1061
0.4
P10809_1081
0.9
P10809_1108
0.6
Non-classical monocyte nTPM: 1.0
Samples: 5
Max nTPM: 2.1
Min nTPM: 0.5
P10809_1005
1.0
P10809_1053
0.5
P10809_1072
2.1
P10809_1082
0.7
P10809_1109
0.5
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
5.3
Monaco sample
nTPM
Classical monocyte nTPM: 3.1
Samples: 4
Max nTPM: 3.7
Min nTPM: 2.3
RHH5313_R3680
3.7
RHH5221_R3593
3.5
RHH5250_R3622
2.7
RHH5279_R3651
2.3
Intermediate monocyte nTPM: 5.3
Samples: 4
Max nTPM: 6.6
Min nTPM: 4.1
RHH5314_R3681
4.1
RHH5222_R3594
4.5
RHH5251_R3623
6.1
RHH5280_R3652
6.6
Non-classical monocyte nTPM: 5.4
Samples: 4
Max nTPM: 6.1
Min nTPM: 4.7
RHH5315_R3682
4.9
RHH5223_R3595
5.7
RHH5252_R3624
6.1
RHH5281_R3653
4.7
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
17.9
Schmiedel sample id
TPM
Classical monocyte TPM: 14.2
Samples: 91
Max TPM: 17.3
Min TPM: 8.9
MONOCYTES_1
17.3
MONOCYTES_2
17.2
MONOCYTES_3
16.9
MONOCYTES_4
16.5
MONOCYTES_5
16.3
MONOCYTES_6
16.2
MONOCYTES_7
16.1
MONOCYTES_8
16.0
MONOCYTES_9
16.0
MONOCYTES_10
16.0
MONOCYTES_11
15.9
MONOCYTES_12
15.7
MONOCYTES_13
15.6
MONOCYTES_14
15.6
MONOCYTES_15
15.5
MONOCYTES_16
15.4
MONOCYTES_17
15.3
MONOCYTES_18
15.3
MONOCYTES_19
15.3
MONOCYTES_20
15.2
MONOCYTES_21
15.1
MONOCYTES_22
15.1
MONOCYTES_23
15.0
MONOCYTES_24
15.0
MONOCYTES_25
14.9
MONOCYTES_26
14.9
MONOCYTES_27
14.9
MONOCYTES_28
14.9
MONOCYTES_29
14.9
MONOCYTES_30
14.9
MONOCYTES_31
14.8
MONOCYTES_32
14.8
MONOCYTES_33
14.8
MONOCYTES_34
14.8
MONOCYTES_35
14.7
MONOCYTES_36
14.7
MONOCYTES_37
14.6
MONOCYTES_38
14.6
MONOCYTES_39
14.6
MONOCYTES_40
14.5
MONOCYTES_41
14.5
MONOCYTES_42
14.5
MONOCYTES_43
14.5
MONOCYTES_44
14.4
MONOCYTES_45
14.4
MONOCYTES_46
14.4
MONOCYTES_47
14.4
MONOCYTES_48
14.3
MONOCYTES_49
14.3
MONOCYTES_50
14.3
MONOCYTES_51
14.2
MONOCYTES_52
14.2
MONOCYTES_53
14.2
MONOCYTES_54
14.2
MONOCYTES_55
14.2
MONOCYTES_56
14.2
MONOCYTES_57
14.1
MONOCYTES_58
14.1
MONOCYTES_59
14.0
MONOCYTES_60
13.9
MONOCYTES_61
13.9
MONOCYTES_62
13.8
MONOCYTES_63
13.8
MONOCYTES_64
13.8
MONOCYTES_65
13.8
MONOCYTES_66
13.7
MONOCYTES_67
13.7
MONOCYTES_68
13.6
MONOCYTES_69
13.6
MONOCYTES_70
13.6
MONOCYTES_71
13.6
MONOCYTES_72
13.5
MONOCYTES_73
13.5
MONOCYTES_74
13.5
MONOCYTES_75
13.5
MONOCYTES_76
13.4
MONOCYTES_77
13.2
MONOCYTES_78
13.0
MONOCYTES_79
12.9
MONOCYTES_80
12.8
MONOCYTES_81
12.4
MONOCYTES_82
12.3
MONOCYTES_83
11.9
MONOCYTES_84
11.5
MONOCYTES_85
11.4
MONOCYTES_86
11.4
MONOCYTES_87
11.2
MONOCYTES_88
11.1
MONOCYTES_89
11.0
MONOCYTES_90
11.0
MONOCYTES_91
8.9
Show allShow less
Non-classical monocyte TPM: 17.9
Samples: 90
Max TPM: 22.0
Min TPM: 10.6
M2_1
22.0
M2_2
22.0
M2_3
21.9
M2_4
21.9
M2_5
21.8
M2_6
21.7
M2_7
21.0
M2_8
20.8
M2_9
20.8
M2_10
20.7
M2_11
20.7
M2_12
20.6
M2_13
20.4
M2_14
20.3
M2_15
20.3
M2_16
20.3
M2_17
20.2
M2_18
20.1
M2_19
20.1
M2_20
20.0
M2_21
19.9
M2_22
19.9
M2_23
19.9
M2_24
19.8
M2_25
19.6
M2_26
19.6
M2_27
19.5
M2_28
19.4
M2_29
19.3
M2_30
19.3
M2_31
19.2
M2_32
19.2
M2_33
19.1
M2_34
19.1
M2_35
19.0
M2_36
18.9
M2_37
18.8
M2_38
18.8
M2_39
18.7
M2_40
18.7
M2_41
18.6
M2_42
18.6
M2_43
18.5
M2_44
18.5
M2_45
18.4
M2_46
18.3
M2_47
18.2
M2_48
18.2
M2_49
18.0
M2_50
18.0
M2_51
17.9
M2_52
17.9
M2_53
17.8
M2_54
17.8
M2_55
17.6
M2_56
17.4
M2_57
17.4
M2_58
17.4
M2_59
17.2
M2_60
17.2
M2_61
17.2
M2_62
17.1
M2_63
17.0
M2_64
17.0
M2_65
17.0
M2_66
17.0
M2_67
16.8
M2_68
16.6
M2_69
16.6
M2_70
16.6
M2_71
16.4
M2_72
16.4
M2_73
16.2
M2_74
16.0
M2_75
15.7
M2_76
15.5
M2_77
15.3
M2_78
15.0
M2_79
14.8
M2_80
14.7
M2_81
14.5
M2_82
14.3
M2_83
13.6
M2_84
13.4
M2_85
12.7
M2_86
12.6
M2_87
12.2
M2_88
11.8
M2_89
11.4
M2_90
10.6
Show allShow less
We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
The Human Protein Atlas project is funded
