A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
3.6
nTPM
Monaco:
61.5
nTPM
Schmiedel:
56.7
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
3.6
HPA sample
nTPM
Memory B-cell nTPM: 3.5
Samples: 6
Max nTPM: 4.8
Min nTPM: 2.3
P10809_1017
2.9
P10809_1025
2.3
P10809_1044
4.6
P10809_1063
3.0
P10809_1092
3.6
P10809_1105
4.8
Naive B-cell nTPM: 2.6
Samples: 6
Max nTPM: 3.8
Min nTPM: 1.3
P10809_1011
2.4
P10809_1029
3.8
P10809_1048
1.8
P10809_1067
3.6
P10809_1091
1.3
P10809_1104
2.9
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
61.5
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 33.2
Samples: 4
Max nTPM: 45.6
Min nTPM: 20.4
RHH5310_R3677
26.0
RHH5218_R3590
45.6
RHH5247_R3619
40.8
RHH5276_R3648
20.4
Naive B-cell nTPM: 42.3
Samples: 4
Max nTPM: 52.2
Min nTPM: 37.1
RHH5308_R3675
37.1
RHH5216_R3588
52.2
RHH5245_R3617
38.7
RHH5274_R3646
41.0
Non-switched memory B-cell nTPM: 61.5
Samples: 4
Max nTPM: 79.0
Min nTPM: 50.4
RHH5309_R3676
50.4
RHH5217_R3589
79.0
RHH5246_R3618
60.1
RHH5275_R3647
56.4
Plasmablast nTPM: 33.0
Samples: 4
Max nTPM: 36.4
Min nTPM: 28.7
RHH5312_R3679
33.4
RHH5220_R3592
33.6
RHH5249_R3621
36.4
RHH5278_R3650
28.7
Switched memory B-cell nTPM: 44.1
Samples: 4
Max nTPM: 48.7
Min nTPM: 37.1
RHH5311_R3678
43.2
RHH5219_R3591
47.4
RHH5248_R3620
37.1
RHH5277_R3649
48.7
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
56.7
Schmiedel sample id
TPM
Naive B-cell TPM: 56.7
Samples: 91
Max TPM: 81.8
Min TPM: 41.6
B_CELL_NAIVE_1
81.8
B_CELL_NAIVE_2
81.3
B_CELL_NAIVE_3
79.3
B_CELL_NAIVE_4
78.0
B_CELL_NAIVE_5
77.9
B_CELL_NAIVE_6
77.1
B_CELL_NAIVE_7
76.7
B_CELL_NAIVE_8
72.8
B_CELL_NAIVE_9
68.9
B_CELL_NAIVE_10
68.5
B_CELL_NAIVE_11
66.8
B_CELL_NAIVE_12
66.3
B_CELL_NAIVE_13
66.1
B_CELL_NAIVE_14
65.1
B_CELL_NAIVE_15
64.7
B_CELL_NAIVE_16
64.6
B_CELL_NAIVE_17
63.3
B_CELL_NAIVE_18
62.9
B_CELL_NAIVE_19
62.7
B_CELL_NAIVE_20
62.3
B_CELL_NAIVE_21
62.2
B_CELL_NAIVE_22
62.1
B_CELL_NAIVE_23
62.0
B_CELL_NAIVE_24
61.5
B_CELL_NAIVE_25
61.0
B_CELL_NAIVE_26
60.8
B_CELL_NAIVE_27
60.6
B_CELL_NAIVE_28
60.1
B_CELL_NAIVE_29
59.9
B_CELL_NAIVE_30
59.6
B_CELL_NAIVE_31
58.9
B_CELL_NAIVE_32
58.9
B_CELL_NAIVE_33
58.4
B_CELL_NAIVE_34
58.3
B_CELL_NAIVE_35
58.1
B_CELL_NAIVE_36
58.0
B_CELL_NAIVE_37
57.8
B_CELL_NAIVE_38
56.7
B_CELL_NAIVE_39
56.7
B_CELL_NAIVE_40
56.6
B_CELL_NAIVE_41
56.2
B_CELL_NAIVE_42
56.1
B_CELL_NAIVE_43
56.0
B_CELL_NAIVE_44
55.6
B_CELL_NAIVE_45
55.5
B_CELL_NAIVE_46
55.5
B_CELL_NAIVE_47
55.2
B_CELL_NAIVE_48
54.9
B_CELL_NAIVE_49
54.6
B_CELL_NAIVE_50
54.5
B_CELL_NAIVE_51
53.9
B_CELL_NAIVE_52
53.9
B_CELL_NAIVE_53
53.6
B_CELL_NAIVE_54
53.4
B_CELL_NAIVE_55
53.2
B_CELL_NAIVE_56
53.1
B_CELL_NAIVE_57
52.8
B_CELL_NAIVE_58
52.8
B_CELL_NAIVE_59
52.6
B_CELL_NAIVE_60
52.6
B_CELL_NAIVE_61
52.4
B_CELL_NAIVE_62
52.2
B_CELL_NAIVE_63
51.9
B_CELL_NAIVE_64
50.9
B_CELL_NAIVE_65
50.6
B_CELL_NAIVE_66
50.5
B_CELL_NAIVE_67
50.3
B_CELL_NAIVE_68
50.2
B_CELL_NAIVE_69
50.1
B_CELL_NAIVE_70
49.8
B_CELL_NAIVE_71
48.8
B_CELL_NAIVE_72
48.5
B_CELL_NAIVE_73
48.1
B_CELL_NAIVE_74
48.1
B_CELL_NAIVE_75
47.9
B_CELL_NAIVE_76
47.7
B_CELL_NAIVE_77
47.7
B_CELL_NAIVE_78
47.5
B_CELL_NAIVE_79
47.2
B_CELL_NAIVE_80
46.9
B_CELL_NAIVE_81
46.8
B_CELL_NAIVE_82
46.7
B_CELL_NAIVE_83
46.6
B_CELL_NAIVE_84
45.9
B_CELL_NAIVE_85
45.4
B_CELL_NAIVE_86
45.1
B_CELL_NAIVE_87
45.1
B_CELL_NAIVE_88
44.1
B_CELL_NAIVE_89
42.3
B_CELL_NAIVE_90
41.9
B_CELL_NAIVE_91
41.6
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