A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
4.9
nTPM
Monaco:
42.4
nTPM
Schmiedel:
47.8
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
4.9
HPA sample
nTPM
Classical monocyte nTPM: 3.5
Samples: 6
Max nTPM: 4.9
Min nTPM: 1.5
P10809_1003
1.5
P10809_1020
2.5
P10809_1039
3.2
P10809_1058
4.6
P10809_1080
4.0
P10809_1107
4.9
Intermediate monocyte nTPM: 4.8
Samples: 6
Max nTPM: 8.0
Min nTPM: 3.0
P10809_1004
3.0
P10809_1023
5.1
P10809_1042
4.4
P10809_1061
3.4
P10809_1081
5.0
P10809_1108
8.0
Non-classical monocyte nTPM: 4.9
Samples: 5
Max nTPM: 6.8
Min nTPM: 3.5
P10809_1005
4.1
P10809_1053
3.5
P10809_1072
6.3
P10809_1082
3.8
P10809_1109
6.8
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
42.4
Monaco sample
nTPM
Classical monocyte nTPM: 41.9
Samples: 4
Max nTPM: 48.6
Min nTPM: 37.3
RHH5313_R3680
43.0
RHH5221_R3593
48.6
RHH5250_R3622
37.3
RHH5279_R3651
38.9
Intermediate monocyte nTPM: 42.4
Samples: 4
Max nTPM: 48.7
Min nTPM: 36.4
RHH5314_R3681
48.7
RHH5222_R3594
40.6
RHH5251_R3623
43.9
RHH5280_R3652
36.4
Non-classical monocyte nTPM: 36.3
Samples: 4
Max nTPM: 41.6
Min nTPM: 28.0
RHH5315_R3682
28.0
RHH5223_R3595
41.6
RHH5252_R3624
37.8
RHH5281_R3653
37.6
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
47.8
Schmiedel sample id
TPM
Classical monocyte TPM: 37.4
Samples: 91
Max TPM: 50.2
Min TPM: 27.4
MONOCYTES_1
50.2
MONOCYTES_2
47.8
MONOCYTES_3
47.2
MONOCYTES_4
47.1
MONOCYTES_5
46.4
MONOCYTES_6
46.2
MONOCYTES_7
46.0
MONOCYTES_8
45.8
MONOCYTES_9
43.9
MONOCYTES_10
43.7
MONOCYTES_11
43.7
MONOCYTES_12
43.4
MONOCYTES_13
43.4
MONOCYTES_14
43.2
MONOCYTES_15
43.0
MONOCYTES_16
42.8
MONOCYTES_17
42.5
MONOCYTES_18
42.3
MONOCYTES_19
42.0
MONOCYTES_20
41.9
MONOCYTES_21
41.1
MONOCYTES_22
41.0
MONOCYTES_23
40.6
MONOCYTES_24
40.4
MONOCYTES_25
40.2
MONOCYTES_26
39.9
MONOCYTES_27
39.8
MONOCYTES_28
39.7
MONOCYTES_29
39.2
MONOCYTES_30
39.1
MONOCYTES_31
38.9
MONOCYTES_32
38.8
MONOCYTES_33
38.4
MONOCYTES_34
38.4
MONOCYTES_35
38.2
MONOCYTES_36
38.2
MONOCYTES_37
37.8
MONOCYTES_38
37.8
MONOCYTES_39
37.6
MONOCYTES_40
37.6
MONOCYTES_41
37.3
MONOCYTES_42
37.1
MONOCYTES_43
37.1
MONOCYTES_44
37.0
MONOCYTES_45
37.0
MONOCYTES_46
36.7
MONOCYTES_47
36.6
MONOCYTES_48
36.5
MONOCYTES_49
36.3
MONOCYTES_50
36.1
MONOCYTES_51
36.0
MONOCYTES_52
36.0
MONOCYTES_53
36.0
MONOCYTES_54
35.9
MONOCYTES_55
35.8
MONOCYTES_56
35.7
MONOCYTES_57
35.7
MONOCYTES_58
35.5
MONOCYTES_59
35.4
MONOCYTES_60
35.2
MONOCYTES_61
35.0
MONOCYTES_62
34.9
MONOCYTES_63
34.7
MONOCYTES_64
34.4
MONOCYTES_65
34.4
MONOCYTES_66
34.2
MONOCYTES_67
33.8
MONOCYTES_68
33.8
MONOCYTES_69
33.8
MONOCYTES_70
33.8
MONOCYTES_71
33.7
MONOCYTES_72
33.4
MONOCYTES_73
33.3
MONOCYTES_74
33.2
MONOCYTES_75
32.8
MONOCYTES_76
32.7
MONOCYTES_77
32.3
MONOCYTES_78
32.2
MONOCYTES_79
32.0
MONOCYTES_80
31.9
MONOCYTES_81
31.9
MONOCYTES_82
31.7
MONOCYTES_83
31.6
MONOCYTES_84
31.1
MONOCYTES_85
30.8
MONOCYTES_86
30.7
MONOCYTES_87
30.3
MONOCYTES_88
30.0
MONOCYTES_89
28.6
MONOCYTES_90
27.6
MONOCYTES_91
27.4
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Non-classical monocyte TPM: 47.8
Samples: 90
Max TPM: 71.2
Min TPM: 29.0
M2_1
71.2
M2_2
70.0
M2_3
68.6
M2_4
66.9
M2_5
65.3
M2_6
65.1
M2_7
60.5
M2_8
60.4
M2_9
60.1
M2_10
59.6
M2_11
59.5
M2_12
59.5
M2_13
57.4
M2_14
56.9
M2_15
56.1
M2_16
55.5
M2_17
55.2
M2_18
55.1
M2_19
54.6
M2_20
54.4
M2_21
53.9
M2_22
53.6
M2_23
53.0
M2_24
52.8
M2_25
52.8
M2_26
52.6
M2_27
52.0
M2_28
51.9
M2_29
51.6
M2_30
51.4
M2_31
50.7
M2_32
50.5
M2_33
50.3
M2_34
50.2
M2_35
49.8
M2_36
49.3
M2_37
49.2
M2_38
48.8
M2_39
48.7
M2_40
48.5
M2_41
48.2
M2_42
47.4
M2_43
47.3
M2_44
46.8
M2_45
46.5
M2_46
46.3
M2_47
45.6
M2_48
45.2
M2_49
45.2
M2_50
45.1
M2_51
44.8
M2_52
44.7
M2_53
44.3
M2_54
44.3
M2_55
44.2
M2_56
43.8
M2_57
43.4
M2_58
43.3
M2_59
43.2
M2_60
43.2
M2_61
43.0
M2_62
42.7
M2_63
42.7
M2_64
42.6
M2_65
42.6
M2_66
42.4
M2_67
42.2
M2_68
41.6
M2_69
41.2
M2_70
41.1
M2_71
41.1
M2_72
40.5
M2_73
39.9
M2_74
39.7
M2_75
39.7
M2_76
39.3
M2_77
39.2
M2_78
38.8
M2_79
38.0
M2_80
37.7
M2_81
37.4
M2_82
37.3
M2_83
36.7
M2_84
36.0
M2_85
35.2
M2_86
34.2
M2_87
34.1
M2_88
33.7
M2_89
33.6
M2_90
29.0
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