A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
28192.5
nTPM
Monaco:
28745.4
nTPM
Schmiedel:
8305.8
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
28192.5
HPA sample
nTPM
Memory B-cell nTPM: 27121.3
Samples: 6
Max nTPM: 52188.5
Min nTPM: 19865.2
P10809_1017
19865.2
P10809_1025
26914.5
P10809_1044
52188.5
P10809_1063
21642.9
P10809_1092
21349.0
P10809_1105
20767.4
Naive B-cell nTPM: 28192.6
Samples: 6
Max nTPM: 44067.7
Min nTPM: 20519.9
P10809_1011
20519.9
P10809_1029
28861.2
P10809_1048
44067.7
P10809_1067
22240.5
P10809_1091
27803.6
P10809_1104
25662.4
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
28745.4
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 27641.0
Samples: 4
Max nTPM: 34649.4
Min nTPM: 16430.0
RHH5310_R3677
34649.4
RHH5218_R3590
24985.3
RHH5247_R3619
34499.4
RHH5276_R3648
16430.0
Naive B-cell nTPM: 26971.7
Samples: 4
Max nTPM: 34132.8
Min nTPM: 15819.6
RHH5308_R3675
31454.1
RHH5216_R3588
34132.8
RHH5245_R3617
15819.6
RHH5274_R3646
26480.1
Non-switched memory B-cell nTPM: 26968.4
Samples: 4
Max nTPM: 39404.5
Min nTPM: 14433.7
RHH5309_R3676
28857.3
RHH5217_R3589
25177.9
RHH5246_R3618
39404.5
RHH5275_R3647
14433.7
Plasmablast nTPM: 4817.0
Samples: 4
Max nTPM: 6833.1
Min nTPM: 3503.3
RHH5312_R3679
4069.5
RHH5220_R3592
4862.0
RHH5249_R3621
6833.1
RHH5278_R3650
3503.3
Switched memory B-cell nTPM: 28745.4
Samples: 4
Max nTPM: 39351.8
Min nTPM: 18382.4
RHH5311_R3678
39351.8
RHH5219_R3591
29721.0
RHH5248_R3620
27526.2
RHH5277_R3649
18382.4
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
8305.8
Schmiedel sample id
TPM
Naive B-cell TPM: 8305.8
Samples: 91
Max TPM: 13468.7
Min TPM: 3048.4
B_CELL_NAIVE_1
13468.7
B_CELL_NAIVE_2
12508.0
B_CELL_NAIVE_3
12242.9
B_CELL_NAIVE_4
11912.4
B_CELL_NAIVE_5
11898.7
B_CELL_NAIVE_6
11404.9
B_CELL_NAIVE_7
11159.7
B_CELL_NAIVE_8
10915.6
B_CELL_NAIVE_9
10687.0
B_CELL_NAIVE_10
10669.8
B_CELL_NAIVE_11
10637.6
B_CELL_NAIVE_12
10623.1
B_CELL_NAIVE_13
10259.4
B_CELL_NAIVE_14
10152.1
B_CELL_NAIVE_15
10056.9
B_CELL_NAIVE_16
9980.7
B_CELL_NAIVE_17
9831.0
B_CELL_NAIVE_18
9801.6
B_CELL_NAIVE_19
9698.4
B_CELL_NAIVE_20
9631.9
B_CELL_NAIVE_21
9544.7
B_CELL_NAIVE_22
9483.3
B_CELL_NAIVE_23
9440.8
B_CELL_NAIVE_24
9416.8
B_CELL_NAIVE_25
9404.8
B_CELL_NAIVE_26
9367.4
B_CELL_NAIVE_27
9329.0
B_CELL_NAIVE_28
9287.4
B_CELL_NAIVE_29
9207.3
B_CELL_NAIVE_30
9171.1
B_CELL_NAIVE_31
9164.2
B_CELL_NAIVE_32
9066.4
B_CELL_NAIVE_33
9018.3
B_CELL_NAIVE_34
8990.4
B_CELL_NAIVE_35
8983.2
B_CELL_NAIVE_36
8978.5
B_CELL_NAIVE_37
8923.4
B_CELL_NAIVE_38
8880.2
B_CELL_NAIVE_39
8845.2
B_CELL_NAIVE_40
8754.6
B_CELL_NAIVE_41
8741.1
B_CELL_NAIVE_42
8723.2
B_CELL_NAIVE_43
8673.4
B_CELL_NAIVE_44
8664.8
B_CELL_NAIVE_45
8615.4
B_CELL_NAIVE_46
8578.3
B_CELL_NAIVE_47
8540.5
B_CELL_NAIVE_48
8535.4
B_CELL_NAIVE_49
8516.8
B_CELL_NAIVE_50
8367.1
B_CELL_NAIVE_51
8365.0
B_CELL_NAIVE_52
8339.7
B_CELL_NAIVE_53
8220.0
B_CELL_NAIVE_54
8214.7
B_CELL_NAIVE_55
8210.4
B_CELL_NAIVE_56
8163.4
B_CELL_NAIVE_57
8032.5
B_CELL_NAIVE_58
8013.3
B_CELL_NAIVE_59
7905.2
B_CELL_NAIVE_60
7894.9
B_CELL_NAIVE_61
7888.4
B_CELL_NAIVE_62
7865.5
B_CELL_NAIVE_63
7843.9
B_CELL_NAIVE_64
7607.7
B_CELL_NAIVE_65
7598.6
B_CELL_NAIVE_66
7494.4
B_CELL_NAIVE_67
7477.6
B_CELL_NAIVE_68
7310.2
B_CELL_NAIVE_69
7188.6
B_CELL_NAIVE_70
7145.2
B_CELL_NAIVE_71
7110.8
B_CELL_NAIVE_72
7079.8
B_CELL_NAIVE_73
6963.2
B_CELL_NAIVE_74
6952.5
B_CELL_NAIVE_75
6601.2
B_CELL_NAIVE_76
6351.2
B_CELL_NAIVE_77
6324.2
B_CELL_NAIVE_78
5981.0
B_CELL_NAIVE_79
5840.9
B_CELL_NAIVE_80
5825.2
B_CELL_NAIVE_81
5719.1
B_CELL_NAIVE_82
5356.0
B_CELL_NAIVE_83
5204.0
B_CELL_NAIVE_84
5075.9
B_CELL_NAIVE_85
4712.4
B_CELL_NAIVE_86
4003.1
B_CELL_NAIVE_87
3782.9
B_CELL_NAIVE_88
3541.3
B_CELL_NAIVE_89
3505.5
B_CELL_NAIVE_90
3312.2
B_CELL_NAIVE_91
3048.4
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