A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
16174.8
nTPM
Monaco:
13172.0
nTPM
Schmiedel:
4417.5
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
16174.8
HPA sample
nTPM
Classical monocyte nTPM: 11129.6
Samples: 6
Max nTPM: 20909.2
Min nTPM: 6863.7
P10809_1003
20909.2
P10809_1020
13271.1
P10809_1039
8745.9
P10809_1058
6863.7
P10809_1080
8628.5
P10809_1107
8358.9
Intermediate monocyte nTPM: 16174.8
Samples: 6
Max nTPM: 20002.1
Min nTPM: 13359.9
P10809_1004
17936.8
P10809_1023
16605.8
P10809_1042
15573.8
P10809_1061
20002.1
P10809_1081
13359.9
P10809_1108
13570.6
Non-classical monocyte nTPM: 8146.1
Samples: 5
Max nTPM: 12450.6
Min nTPM: 4650.4
P10809_1005
8669.5
P10809_1053
6700.1
P10809_1072
12450.6
P10809_1082
4650.4
P10809_1109
8260.1
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
13172.0
Monaco sample
nTPM
Classical monocyte nTPM: 13172.0
Samples: 4
Max nTPM: 14251.9
Min nTPM: 11521.1
RHH5313_R3680
11521.1
RHH5221_R3593
14251.9
RHH5250_R3622
14189.1
RHH5279_R3651
12726.0
Intermediate monocyte nTPM: 12180.8
Samples: 4
Max nTPM: 16649.8
Min nTPM: 5933.6
RHH5314_R3681
16649.8
RHH5222_R3594
10100.9
RHH5251_R3623
5933.6
RHH5280_R3652
16038.7
Non-classical monocyte nTPM: 7740.9
Samples: 4
Max nTPM: 9353.6
Min nTPM: 6118.7
RHH5315_R3682
8039.5
RHH5223_R3595
7451.7
RHH5252_R3624
6118.7
RHH5281_R3653
9353.6
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
4417.5
Schmiedel sample id
TPM
Classical monocyte TPM: 4417.5
Samples: 91
Max TPM: 6231.0
Min TPM: 2505.4
MONOCYTES_1
6231.0
MONOCYTES_2
6056.5
MONOCYTES_3
6026.0
MONOCYTES_4
5945.3
MONOCYTES_5
5889.9
MONOCYTES_6
5871.6
MONOCYTES_7
5853.5
MONOCYTES_8
5720.4
MONOCYTES_9
5645.9
MONOCYTES_10
5634.4
MONOCYTES_11
5518.2
MONOCYTES_12
5368.6
MONOCYTES_13
5355.7
MONOCYTES_14
5351.8
MONOCYTES_15
5295.8
MONOCYTES_16
5256.0
MONOCYTES_17
5176.7
MONOCYTES_18
5143.3
MONOCYTES_19
5117.6
MONOCYTES_20
5084.4
MONOCYTES_21
5074.7
MONOCYTES_22
5060.8
MONOCYTES_23
5036.0
MONOCYTES_24
5020.8
MONOCYTES_25
4981.0
MONOCYTES_26
4946.6
MONOCYTES_27
4834.5
MONOCYTES_28
4814.7
MONOCYTES_29
4803.5
MONOCYTES_30
4787.3
MONOCYTES_31
4726.7
MONOCYTES_32
4722.8
MONOCYTES_33
4713.2
MONOCYTES_34
4710.8
MONOCYTES_35
4707.1
MONOCYTES_36
4697.9
MONOCYTES_37
4689.6
MONOCYTES_38
4676.9
MONOCYTES_39
4652.8
MONOCYTES_40
4627.0
MONOCYTES_41
4610.1
MONOCYTES_42
4600.5
MONOCYTES_43
4574.4
MONOCYTES_44
4542.4
MONOCYTES_45
4539.4
MONOCYTES_46
4537.8
MONOCYTES_47
4530.0
MONOCYTES_48
4524.5
MONOCYTES_49
4495.7
MONOCYTES_50
4492.4
MONOCYTES_51
4416.7
MONOCYTES_52
4398.2
MONOCYTES_53
4355.9
MONOCYTES_54
4320.6
MONOCYTES_55
4283.8
MONOCYTES_56
4244.1
MONOCYTES_57
4186.3
MONOCYTES_58
4175.5
MONOCYTES_59
4101.2
MONOCYTES_60
4057.3
MONOCYTES_61
4015.5
MONOCYTES_62
3964.2
MONOCYTES_63
3906.9
MONOCYTES_64
3854.8
MONOCYTES_65
3853.3
MONOCYTES_66
3832.3
MONOCYTES_67
3757.3
MONOCYTES_68
3726.7
MONOCYTES_69
3610.2
MONOCYTES_70
3609.0
MONOCYTES_71
3606.7
MONOCYTES_72
3585.5
MONOCYTES_73
3561.2
MONOCYTES_74
3545.8
MONOCYTES_75
3485.1
MONOCYTES_76
3483.8
MONOCYTES_77
3411.0
MONOCYTES_78
3379.4
MONOCYTES_79
3353.7
MONOCYTES_80
3334.1
MONOCYTES_81
3273.6
MONOCYTES_82
3245.8
MONOCYTES_83
3210.3
MONOCYTES_84
3204.5
MONOCYTES_85
3166.3
MONOCYTES_86
3031.7
MONOCYTES_87
3024.5
MONOCYTES_88
2972.4
MONOCYTES_89
2886.2
MONOCYTES_90
2778.8
MONOCYTES_91
2505.4
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Non-classical monocyte TPM: 2443.7
Samples: 90
Max TPM: 4432.6
Min TPM: 1046.3
M2_1
4432.6
M2_2
4306.0
M2_3
4063.9
M2_4
3761.3
M2_5
3661.3
M2_6
3571.6
M2_7
3437.5
M2_8
3338.7
M2_9
3274.7
M2_10
3240.8
M2_11
3139.9
M2_12
3060.4
M2_13
3033.8
M2_14
3026.2
M2_15
3013.0
M2_16
3008.5
M2_17
3005.1
M2_18
2999.2
M2_19
2947.8
M2_20
2914.9
M2_21
2909.0
M2_22
2906.3
M2_23
2888.3
M2_24
2863.2
M2_25
2860.4
M2_26
2829.0
M2_27
2791.6
M2_28
2777.2
M2_29
2749.8
M2_30
2716.5
M2_31
2697.5
M2_32
2673.3
M2_33
2660.4
M2_34
2652.1
M2_35
2642.0
M2_36
2613.3
M2_37
2592.1
M2_38
2578.4
M2_39
2559.2
M2_40
2545.7
M2_41
2543.2
M2_42
2530.3
M2_43
2489.1
M2_44
2449.7
M2_45
2444.5
M2_46
2433.2
M2_47
2397.6
M2_48
2357.2
M2_49
2355.0
M2_50
2338.5
M2_51
2330.9
M2_52
2313.3
M2_53
2281.5
M2_54
2262.4
M2_55
2246.4
M2_56
2208.9
M2_57
2208.8
M2_58
2192.4
M2_59
2185.5
M2_60
2169.5
M2_61
2101.4
M2_62
2017.9
M2_63
2012.2
M2_64
2003.6
M2_65
1989.7
M2_66
1923.3
M2_67
1918.0
M2_68
1888.1
M2_69
1883.1
M2_70
1878.7
M2_71
1865.8
M2_72
1862.7
M2_73
1832.4
M2_74
1822.7
M2_75
1817.7
M2_76
1770.7
M2_77
1730.1
M2_78
1713.6
M2_79
1682.6
M2_80
1679.0
M2_81
1669.7
M2_82
1631.4
M2_83
1519.2
M2_84
1495.0
M2_85
1442.5
M2_86
1417.3
M2_87
1387.8
M2_88
1370.1
M2_89
1076.6
M2_90
1046.3
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