NCDN
HPA
RESOURCES
  • TISSUE
  • BRAIN
  • SINGLE CELL
  • IMMUNE CELL
  • SUBCELLULAR
  • CANCER
  • BLOOD
  • CELL LINE
  • STRUCTURE
  • INTERACTION
  • METABOLIC
  • ISOFORM
  • EVOLUTIONARY
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • AI IMPLEMENTATIONS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
HELP
  • HELP & FAQ
  • ANTIBODY AVAILABILITY
  • DISCLAIMER
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Category
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Antibody panel
Tissue
Main location
Patient ID
Annotation
Tissue
Category
Tau score
Tissue
Category
Tau score
Tissue
Category
Tau score
Cluster
Reliability
Region
Niche
Category
Brain region
Category
Tau score
Brain domain
Category
Tau score
Cell type
Category
Tau score
Cell type
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Cluster
Reliability
Cell type
Category
Tau score
Cell type group
Category
Tau score
Single cell
Category
Tau score
Single cell
Category
Tau score
Annotation
Annotation
Annotation
Tissue
Cell type
Enrichment
Cluster
Cell type
Category
Tau score
Cell lineage
Category
Tau score
Cluster
Location
Searches
Location
Cell line
Class
Type
Phase
Reliability
Cancer
Prognosis
Cancer
Regulation
Cancer
Regulation
Cancer
Category
Cancer
Category
Tau score
Correlation
Correlation
Cancer
Category
Tau score
Cluster
Variants
Source
PTM
ipTM
Interacting gene (ensg_id)
Type
Number of interactions
Type
Heterodimer
Subsystem
Isoforms
Specificity
Expression
Species
Ortholog
Type
Species
Tissue
Category
Species
Tau score
Data
Category
Data
Species
Category
Category
Category
Category
Category
Validation
Validation
Validation
Validation
Antibodies
Data type
Column


BETA
  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • IMMUNE

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCTURE

  • INTERACTION

  • METABOLIC

  • ISOFORM

  • EVOLUTION

  • NCDN
EVOLUTIONARY PUTAMEN Show tissue menu
BRAIN74 EYE4 ENDOCRINE TISSUES5 RESPIRATORY SYSTEM6 PROXIMAL DIGESTIVE TRACT5 GASTROINTESTINAL TRACT11 LIVER & GALLBLADDER4 PANCREAS1 KIDNEY & URINARY BLADDER4 MALE REPRODUCTIVE SYSTEM11 BREAST & FEMALE REPRODUCTIVE SYSTEM10 MUSCLE & VASCULAR TISSUE12 CONNECTIVE & SOFT TISSUE15 SKIN4 BONE MARROW & LYMPHOID TISSUES7
Select an organ to show its tissues
AMYGDALA ANGULAR GYRUS ANNECTANT GYRUS ANTERIOR CINGULATE GYRUS BASAL GANGLIA CAUDATE NUCLEUS CAUDATE PUTAMEN CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS CINGULATE CORTEX CLAUSTRUM CORPUS CALLOSUM CUNEUS DORSAL HIPPOCAMPUS DORSAL ROOT GANGLION DORSAL SPINAL CORD ENTORHINAL CORTEX FRONTAL CORTEX
FUSIFORM GYRUS GENICULATE NUCLEUS GLOBUS PALLIDUS GYRUS RECTUS HABENULA HIPPOCAMPAL FORMATION HYPOTHALAMUS HYPOTHALAMUS, ANTERIOR HYPOTHALAMUS, POSTERIOR INFERIOR FRONTAL GYRUS INFERIOR OCCIPITAL GYRUS INFERIOR TEMPORAL GYRUS INSULAR CORTEX LATERAL THALAMIC NUCLEI MEDULLA OBLONGATA MIDBRAIN MIDDLE FRONTAL GYRUS MIDDLE TEMPORAL GYRUS MOTOR AND PREFRONTAL CORTEX
MOTOR CORTEX OCCIPITAL CORTEX OCCIPITAL GYRUS OLFACTORY BULB ORBITAL GYRUS PERIAQUEDUCTAL GRAY PONS POSTCENTRAL GYRUS POSTERIOR CINGULATE CORTEX POSTERIOR PARAHIPPOCAMPAL GYRUS POSTERIOR THALAMUS PRECENTRAL GYRUS PREFRONTAL CORTEX PREOPTIC AREA PUTAMEN RETROSPLENIAL AND CINGULATE CORTEX RETROSPLENIAL CORTEX SEPTAL AREA SEPTUM
SOMATOSENSORY CORTEX SPINAL CORD SUBICULUM SUBSTANTIA NIGRA SUPERIOR COLLICULI SUPERIOR FRONTAL GYRUS SUPERIOR PARIETAL LOBULE SUPERIOR TEMPORAL GYRUS SUPRAMARGINAL GYRUS TEMPORAL CORTEX THALAMUS VENTRAL FOREBRAIN VENTRAL HIPPOCAMPUS VENTRAL PALLIDUM VENTRAL SPINAL CORD VISUAL CORTEX WHITE MATTER
CORNEA HARDERIAN GLAND LENS RETINA
ADRENAL GLAND PARATHYROID GLAND PINEAL GLAND PITUITARY GLAND THYROID GLAND
BRONCHUS LARYNX LUNG NASOPHARYNX OLFACTORY EPITHELIUM TRACHEA
ESOPHAGUS LIP ORAL MUCOSA SALIVARY GLAND TONGUE
CECUM COLON DUODENUM ILEUM JEJUNUM RECTUM SMALL INTESTINE STOMACH STOMACH (LOWER) STOMACH (MIDDLE) STOMACH (UPPER)
GALLBLADDER LIVER LIVER (LOBE 1) LIVER (LOBE 4)
PANCREAS
KIDNEY KIDNEY (CORTEX) KIDNEY (MEDULLA) URINARY BLADDER
BULBOURETHRAL GLAND DUCTUS DEFERENS EPIDIDYMIS MALE PREPUTIAL GLAND PENIS PROSTATE PROSTATE (ANTERIOR) PROSTATE (VENTRAL) SEMINAL VESICLE TESTIS URETHRAL GLAND
BREAST CERVIX CLITORIS ENDOMETRIUM FALLOPIAN TUBE FEMALE PREPUTIAL GLAND OVARY PLACENTA UTERUS VAGINA
AORTA BLOOD VESSEL DIAPHRAGM HEART ATRIUM HEART MUSCLE HEART VALVE HEART WALL PERIPHERAL VASCULATURE SKELETAL MUSCLE SMOOTH MUSCLE SMOOTH MUSCLE (INTESTINE) SMOOTH MUSCLE (UTERUS)
ABDOMINAL ADIPOSE TISSUE ADIPOSE TISSUE BROWN ADIPOSE TISSUE DURA MATER EAR CANAL EAR CARTILAGE JOINT CARTILAGE MENINGES ORBITAL ADIPOSE TISSUE PERICARDIUM PERITONEUM PLEURA SUBCUTANEOUS ADIPOSE TISSUE SYNOVIAL TISSUE VAGUS NERVE
EYE LID SKIN SKIN (BACK) SKIN (GROIN)
APPENDIX BLOOD, PBMC BONE MARROW LYMPH NODE SPLEEN THYMUS TONSIL
HumanMacaqueMouseRatPig
PRIMARY MOUSE DATA
ANTIBODIES
AND
VALIDATION
Protein evolution
Brain
Evolutionary methods
PUTAMEN - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

HPA Brain:813.0 nTPM
GTEx:520.3 nTPM
FANTOM5:2499.7 Scaled Tags Per Million
Macaque:562.5 nTPM
Pig:451.2 nTPM

PUTAMEN - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

813.0
Sample id Sample description nTPM
Putamen
nTPM: 813.0
1937 Female, age 91, right hemisphere 1265.3
1838 Male, age 80, right hemisphere 1111.4
2466 Female, age 79, unknown 858.2
1829 Male, age 74, unknown 844.1
2482 Female, age 94, left hemisphere 570.9
2489 Female, age 72, unknown 561.2
2647 Male, age 75, left hemisphere 480.1

PUTAMEN - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

520.3
GTEx sample id Sample description nTPM
Brain - Putamen (basal ganglia)
Average nTPM: 520.3
Samples: 254

Max nTPM: 1402.5
Min nTPM: 41.5
Std nTPM: 328.9
Median nTPM: 481.3
GTEX-X4EP-0011-R7B-SM-4PQZW 60-69 years, female 1402.5
GTEX-12WSI-0011-R7b-SM-5GU78 50-59 years, male 1354.4
GTEX-131YS-0011-R7a-SM-5IJDA 60-69 years, female 1317.8
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 1275.6
GTEX-11GS4-0011-R7a-SM-GJ3RK 60-69 years, male 1225.5
GTEX-14PN4-0011-R7b-SM-69LQQ 50-59 years, male 1224.5
GTEX-ZYY3-0011-R7a-SM-H7OGI 60-69 years, female 1200.1
GTEX-1PWST-0011-R7b-SM-F649N 70-79 years, male 1194.1
GTEX-1IDJH-0011-R7a-SM-A9SM1 70-79 years, male 1168.4
GTEX-14C5O-0011-R7b-SM-5YYAH 60-69 years, male 1155.1
GTEX-WHSE-0011-R7A-SM-3P5YZ 20-29 years, male 1151.1
GTEX-12ZZW-0011-R7a-SM-5DUWC 50-59 years, male 1133.2
GTEX-XLM4-0011-R7A-SM-4AT5L 60-69 years, male 1126.6
GTEX-ZAB4-0011-R7a-SM-4SOKE 40-49 years, male 1114.8
GTEX-13N1W-0011-R7b-SM-5MR4F 70-79 years, male 1101.6
GTEX-QVJO-0011-R7A-SM-G8W5W 60-69 years, female 1086.2
GTEX-1LVAO-0011-R7a-SM-EYYWZ 60-69 years, male 1065.0
GTEX-11DYG-0011-R7b-SM-EXUS6 60-69 years, male 1051.7
GTEX-11NV4-0011-R7a-SM-57WDH 60-69 years, male 1040.2
GTEX-11GSO-0011-R7b-SM-H65ZV 60-69 years, male 1031.4
GTEX-16Z82-0011-R7a-SM-7MKGJ 60-69 years, male 979.2
GTEX-T6MN-0011-R7A-SM-32QP5 50-59 years, male 970.3
GTEX-1IY9M-0011-R7a-SM-D4P49 60-69 years, male 970.0
GTEX-1B933-0011-R7a-SM-7DUGX 50-59 years, female 962.3
GTEX-ZYFD-0011-R7a-SM-GPI8Z 50-59 years, male 955.3
GTEX-11PRG-0011-R7a-SM-DNZZT 50-59 years, male 944.6
GTEX-1GTWX-0011-R7a-SM-A96RO 60-69 years, male 937.9
GTEX-1HGF4-0011-R7a-SM-A96S2 60-69 years, male 937.4
GTEX-145MH-0011-R7a-SM-5PNWH 50-59 years, male 933.6
GTEX-WL46-0011-R7A-SM-3LK7X 50-59 years, male 928.4
GTEX-12126-0011-R7a-SM-GJ3Q2 20-29 years, male 924.6
GTEX-13112-0011-R7b-SM-5DUVW 50-59 years, male 923.3
GTEX-1HT8W-0011-R7b-SM-CMKH8 30-39 years, male 920.7
GTEX-111FC-0011-R7a-SM-GIN8V 60-69 years, male 914.5
GTEX-12WSD-0011-R7b-SM-5PNWE 60-69 years, female 914.4
GTEX-1EMGI-0011-R7b-SM-9QEH5 60-69 years, male 909.4
GTEX-13G51-0011-R7b-SM-5LZXG 60-69 years, male 907.2
GTEX-1JMLX-0011-R7a-SM-EY5ZK 50-59 years, male 897.4
GTEX-11ONC-0011-R7b-SM-DO93J 60-69 years, male 896.0
GTEX-139TT-0011-R7b-SM-5J2MN 60-69 years, male 895.9
GTEX-13RTJ-0011-R7b-SM-5P9JS 60-69 years, male 885.3
GTEX-12WSC-0011-R7b-SM-5LU9L 50-59 years, male 881.2
GTEX-ZUA1-0011-R7b-SM-4YCDP 40-49 years, male 875.5
GTEX-1HCVE-0011-R7b-SM-A9G1I 50-59 years, male 870.5
GTEX-13O3O-0011-R7b-SM-5P9GZ 60-69 years, female 870.1
GTEX-1117F-0011-R7a-SM-H65ZK 60-69 years, female 870.0
GTEX-1AX9I-0011-R7b-SM-7P8Q3 60-69 years, male 867.8
GTEX-15RJE-0011-R7a-SM-7DHL9 40-49 years, male 866.7
GTEX-11GSP-0011-R7b-SM-57WC3 60-69 years, female 865.5
GTEX-13O3Q-0011-R7a-SM-5KM38 50-59 years, male 862.4
GTEX-T5JC-0011-R7A-SM-32PME 20-29 years, male 862.2
GTEX-1ICLZ-0011-R7a-SM-ARZLU 60-69 years, male 844.9
GTEX-13FHO-0011-R7b-SM-5LZXD 60-69 years, male 844.4
GTEX-1JMQJ-0011-R7b-SM-F2TA7 50-59 years, male 843.5
GTEX-11ZUS-0011-R7a-SM-GI4X5 30-39 years, male 834.7
GTEX-1C6WA-0011-R7b-SM-7P8S8 60-69 years, male 833.5
GTEX-1I1GQ-0011-R7a-SM-CJI41 50-59 years, male 830.3
GTEX-145LS-0011-R7a-SM-5PNWM 60-69 years, female 818.3
GTEX-1GN73-0011-R7a-SM-CJI2U 60-69 years, male 815.3
GTEX-1H3O1-0011-R7a-SM-CE6SJ 60-69 years, male 813.2
GTEX-1F75A-0011-R7b-SM-9QEHE 50-59 years, male 811.0
GTEX-1LSVX-0011-R7b-SM-F2T9T 60-69 years, male 808.1
GTEX-1LH75-0011-R7a-SM-EXOIF 50-59 years, female 803.8
GTEX-QDT8-0011-R7A-SM-32PKF 30-39 years, female 803.4
GTEX-1QMI2-0011-R7a-SM-F648Q 60-69 years, male 798.2
GTEX-1J8Q2-0011-R7a-SM-CKZPF 60-69 years, male 794.0
GTEX-1HFI6-0011-R7b-SM-CM2SS 40-49 years, male 792.7
GTEX-1313W-0011-R7b-SM-5DUWL 50-59 years, female 757.0
GTEX-RNOR-0011-R7A-SM-2TF4V 50-59 years, female 743.1
GTEX-13X6K-0011-R7b-SM-5P9K7 60-69 years, female 738.2
GTEX-1JMOU-0011-R7b-SM-EY5YH 60-69 years, female 736.1
GTEX-15SHU-0011-R7a-SM-GQ1DL 40-49 years, female 735.2
GTEX-N7MT-0011-R7a-SM-2I3FZ 60-69 years, female 733.4
GTEX-15CHQ-0011-R7b-SM-D4P1Q 60-69 years, male 724.7
GTEX-1IKJJ-0011-R7a-SM-ARZLH 60-69 years, male 721.8
GTEX-15ER7-0011-R7a-SM-6M46N 20-29 years, female 710.8
GTEX-13OW6-0011-R7b-SM-5L3H4 50-59 years, male 710.1
GTEX-1R9K4-0011-R7b-SM-F3K58 60-69 years, male 695.2
GTEX-11DZ1-0011-R7a-SM-DNZZH 50-59 years, male 693.5
GTEX-14ASI-0011-R7b-SM-5YY9G 60-69 years, male 691.5
GTEX-1B996-0011-R7b-SM-7IGNT 60-69 years, male 691.1
GTEX-1IKK5-0011-R7b-SM-A9G39 60-69 years, male 688.7
GTEX-11TTK-0011-R7b-SM-DNZZZ 60-69 years, female 688.3
GTEX-13X6J-0011-R7b-SM-5PNUC 50-59 years, male 685.2
GTEX-13FLV-0011-R7b-SM-5K7WW 50-59 years, male 677.6
GTEX-1H1DG-0011-R7b-SM-A96RR 70-79 years, male 669.9
GTEX-12ZZZ-0011-R7b-SM-5EGLE 60-69 years, male 669.8
GTEX-1HB9E-0011-R7b-SM-A9G1Q 50-59 years, male 660.3
GTEX-12WSM-0011-R7b-SM-5EGLD 60-69 years, male 658.1
GTEX-1R9PO-0011-R7b-SM-F342B 60-69 years, female 646.9
GTEX-11OF3-0011-R7a-SM-57WCG 60-69 years, male 646.1
GTEX-1H3NZ-0011-R7a-SM-A9SKD 60-69 years, male 629.8
GTEX-1N2EF-0011-R7a-SM-F2T9O 60-69 years, male 627.4
GTEX-145MG-0011-R7b-SM-5P9JY 50-59 years, male 625.6
GTEX-14PJO-0011-R7a-SM-664NR 60-69 years, male 624.6
GTEX-1B8L1-0011-R7b-SM-9OSVK 60-69 years, male 619.6
GTEX-13S7M-0011-R7a-SM-5O9DK 60-69 years, female 619.3
GTEX-17EVP-0011-R7a-SM-7LTAN 40-49 years, male 618.1
GTEX-13X6I-0011-R7b-SM-5PNWP 60-69 years, male 618.0
GTEX-1JMPZ-0011-R7b-SM-F2TBB 30-39 years, male 616.9
GTEX-17F97-0011-R7b-SM-7MGVY 50-59 years, male 610.6
GTEX-1JMQK-0011-R7b-SM-EXUTF 60-69 years, male 599.0
GTEX-13FLW-0011-R7b-SM-5L3EZ 50-59 years, male 592.9
GTEX-13OW7-0011-R7b-SM-H6613 50-59 years, male 587.4
GTEX-YJ89-0011-R7a-SM-4V6GO 60-69 years, male 586.2
GTEX-1GF9W-0011-R7b-SM-9QEIF 60-69 years, male 584.4
GTEX-13OW5-0011-R7a-SM-5O9C9 60-69 years, male 571.8
GTEX-1A3MX-0011-R7a-SM-7DUEM 60-69 years, male 571.2
GTEX-132Q8-0011-R7b-SM-5N9F1 60-69 years, male 555.5
GTEX-13JVG-0011-R7b-SM-5MR3Q 60-69 years, male 551.7
GTEX-1P4AB-0011-R7a-SM-F2TAP 50-59 years, male 550.5
GTEX-11DXY-0011-R7a-SM-DO11L 60-69 years, male 540.4
GTEX-14BIN-0011-R7b-SM-5S2RI 50-59 years, female 526.1
GTEX-1CB4G-0011-R7b-SM-9QEGP 60-69 years, male 526.1
GTEX-ZAJG-0011-R7a-SM-GQ1CU 50-59 years, female 524.9
GTEX-1PIIG-0011-R7b-SM-F2T9Y 30-39 years, male 518.0
GTEX-15EO6-0011-R7a-SM-6M46Q 50-59 years, male 513.9
GTEX-1JJ6O-0011-R7b-SM-EXUTB 60-69 years, male 512.1
GTEX-117XS-0011-R7a-SM-GI4VO 60-69 years, male 511.4
GTEX-11NUK-0011-R7a-SM-DO93P 50-59 years, male 509.7
GTEX-1H1ZS-0011-R7a-SM-CL54P 70-79 years, male 499.8
GTEX-ZE9C-0011-R7a-SM-4WWCX 60-69 years, male 498.2
GTEX-1J1OQ-0011-R7b-SM-H7OGB 40-49 years, female 496.0
GTEX-1IOXB-0011-R7b-SM-HAUZE 50-59 years, male 494.3
GTEX-WZTO-0011-R7B-SM-4E3IS 40-49 years, male 486.9
GTEX-14ABY-0011-R7b-SM-5PNWS 50-59 years, male 485.5
GTEX-12ZZY-0011-R7a-SM-5EGLB 60-69 years, male 482.3
GTEX-ZDXO-0011-R7a-SM-4WWCU 60-69 years, male 480.3
GTEX-14PJM-0011-R7a-SM-6AJBX 50-59 years, female 475.2
GTEX-1RQEC-0011-R7b-SM-EY5ZS 60-69 years, male 471.9
GTEX-11ZU8-0011-R7a-SM-GJ3Q1 60-69 years, male 470.6
GTEX-Q2AG-0011-R7A-SM-2HMJP 40-49 years, female 464.9
GTEX-Z93S-0011-R7b-SM-4RGNK 50-59 years, male 461.0
GTEX-12WSA-0011-R7b-SM-5GU5U 60-69 years, male 454.2
GTEX-13VXU-0011-R7b-SM-5SI72 50-59 years, male 448.9
GTEX-1GN1U-0011-R7a-SM-CE6RE 50-59 years, female 435.9
GTEX-11DXW-0011-R7b-SM-DO119 40-49 years, male 435.1
GTEX-13OW8-0011-R7a-SM-5L3FP 60-69 years, male 434.8
GTEX-1B8SF-0011-R7b-SM-9OSVM 60-69 years, male 425.9
GTEX-1445S-0011-R7b-SM-5PNUG 60-69 years, male 414.1
GTEX-1GF9V-0011-R7a-SM-CJI2R 60-69 years, male 414.1
GTEX-12WSF-0011-R7b-SM-5HL99 70-79 years, male 409.2
GTEX-144GL-0011-R7b-SM-5P9HX 50-59 years, male 406.5
GTEX-1GN2E-0011-R7b-SM-9QEIJ 60-69 years, male 404.4
GTEX-1EKGG-0011-R7a-SM-CKZNN 60-69 years, male 395.2
GTEX-1LG7Y-0011-R7a-SM-F341Q 50-59 years, male 387.3
GTEX-ZAK1-0011-R7a-SM-H7OH1 50-59 years, female 373.2
GTEX-13FXS-0011-R7a-SM-5L3FC 50-59 years, male 366.4
GTEX-WWYW-0011-R7A-SM-3NB3H 50-59 years, female 362.1
GTEX-1F75W-0011-R7a-SM-9QEI6 60-69 years, male 360.6
GTEX-13PVQ-0011-R7a-SM-5L3G3 50-59 years, male 358.9
GTEX-15DYW-0011-R7a-SM-7KULG 60-69 years, female 356.7
GTEX-1RDX4-0011-R7b-SM-F2TBJ 50-59 years, female 355.9
GTEX-YFC4-0011-R7b-SM-4V6E2 40-49 years, female 355.0
GTEX-12ZZX-0011-R7b-SM-5DUVV 40-49 years, female 354.0
GTEX-PVOW-0011-R7A-SM-H6Q8Q 40-49 years, male 353.1
GTEX-1GZ4I-0011-R7b-SM-ARU71 50-59 years, male 352.6
GTEX-15DCD-0011-R7b-SM-6LPID 70-79 years, female 350.2
GTEX-11H98-0011-R7a-SM-GHWOI 50-59 years, male 348.2
GTEX-1IGQW-0011-R7a-SM-GPRXV 60-69 years, male 342.0
GTEX-1O9I2-0011-R7a-SM-F2TAI 50-59 years, male 340.8
GTEX-1EX96-0011-R7a-SM-9OSVW 50-59 years, male 331.7
GTEX-13NYB-0011-R7a-SM-5MR5D 40-49 years, male 330.1
GTEX-1GMRU-0011-R7b-SM-A96TJ 50-59 years, male 313.5
GTEX-1LSNL-0011-R7a-SM-EYYWI 50-59 years, male 305.0
GTEX-18465-0011-R7b-SM-7LG6V 50-59 years, male 299.7
GTEX-1KWVE-0011-R7b-SM-F6486 30-39 years, male 296.5
GTEX-1E1VI-0011-R7b-SM-9QEGR 50-59 years, male 295.3
GTEX-1MJK2-0011-R7a-SM-EXUS4 50-59 years, male 294.6
GTEX-13FHP-0011-R7b-SM-5LZYI 50-59 years, male 292.8
GTEX-1192X-0011-R7b-SM-DNZZC 50-59 years, male 292.5
GTEX-14E6D-0011-R7b-SM-G9ERK 50-59 years, male 288.9
GTEX-17HG3-0011-R7b-SM-7EPGR 30-39 years, female 287.9
GTEX-1I1GV-0011-R7a-SM-ARU6R 60-69 years, male 274.5
GTEX-1OJC4-0011-R7a-SM-EYYX4 50-59 years, female 268.4
GTEX-13CZV-0011-R7b-SM-5LZXH 60-69 years, male 265.8
GTEX-Y8DK-0011-R7A-SM-4SOJZ 60-69 years, male 263.4
GTEX-1N2EE-0011-R7b-SM-F341E 60-69 years, male 262.9
GTEX-17EVQ-0011-R7a-SM-7EWDA 70-79 years, male 262.4
GTEX-14JG1-0011-R7b-SM-5YYAV 40-49 years, male 260.7
GTEX-13JUV-0011-R7b-SM-5LZZG 40-49 years, female 260.0
GTEX-147GR-0011-R7a-SM-5S2RP 60-69 years, male 257.9
GTEX-16GPK-0011-R7b-SM-H7OF8 60-69 years, male 255.2
GTEX-1GMR8-0011-R7b-SM-CJI2I 50-59 years, female 251.0
GTEX-ZE7O-0011-R7a-SM-57WCU 50-59 years, female 250.9
GTEX-1F52S-0011-R7b-SM-9QEH8 60-69 years, female 238.7
GTEX-14JFF-0011-R7b-SM-G9ERI 60-69 years, male 238.4
GTEX-183WM-0011-R7b-SM-731AX 70-79 years, female 238.3
GTEX-1I1GS-0011-R7a-SM-CM2T6 60-69 years, male 234.1
GTEX-1H23P-0011-R7b-SM-CKZP2 60-69 years, male 225.6
GTEX-14E7W-0011-R7b-SM-5ZZV4 70-79 years, male 223.1
GTEX-1JN6P-0011-R7a-SM-F2TA5 60-69 years, male 219.2
GTEX-1PPGY-0011-R7b-SM-F33YV 60-69 years, male 215.0
GTEX-QMR6-0011-R7A-SM-32PKL 50-59 years, male 214.9
GTEX-144GO-0011-R7b-SM-5S2TT 60-69 years, male 209.2
GTEX-11WQC-0011-R7b-SM-5BC7A 60-69 years, male 208.7
GTEX-1QP6S-0011-R7b-SM-F3K5R 40-49 years, male 206.8
GTEX-1MCQQ-0011-R7a-SM-F649U 60-69 years, male 204.3
GTEX-11EI6-0011-R7a-SM-GINAN 60-69 years, male 203.9
GTEX-17HII-0011-R7a-SM-79OMS 50-59 years, male 203.0
GTEX-1F48J-0011-R7a-SM-CJI2G 50-59 years, female 201.1
GTEX-ZVZQ-0011-R7b-SM-57WBB 60-69 years, female 192.2
GTEX-ZXG5-0011-R7b-SM-57WCC 60-69 years, male 190.2
GTEX-11O72-0011-R7b-SM-GINA9 40-49 years, male 189.6
GTEX-14BMV-0011-R7b-SM-5YY9J 50-59 years, male 187.3
GTEX-1I1CD-0011-R7a-SM-CMKHA 60-69 years, female 185.9
GTEX-ZF28-0011-R7a-SM-4WKF5 60-69 years, male 185.9
GTEX-13OVH-0011-R7a-SM-GI4WY 70-79 years, male 179.2
GTEX-17MF6-0011-R7b-SM-7LG6J 40-49 years, male 176.7
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 172.6
GTEX-11ZTS-0011-R7a-SM-GI4XD 60-69 years, female 171.1
GTEX-1H1CY-0011-R7a-SM-CJI32 60-69 years, female 169.6
GTEX-ZVT3-0011-R7a-SM-57WCO 60-69 years, female 167.2
GTEX-WVLH-0011-R7A-SM-3MJFB 50-59 years, male 162.2
GTEX-17HHY-0011-R7a-SM-718A1 50-59 years, male 162.0
GTEX-1KD5A-0011-R7a-SM-F3K5Y 50-59 years, male 162.0
GTEX-13QJC-0011-R7b-SM-5PNUM 60-69 years, female 161.5
GTEX-1N2DW-0011-R7a-SM-EY5YE 50-59 years, male 158.6
GTEX-1IKOH-0011-R7b-SM-CKZPH 60-69 years, female 155.8
GTEX-1R46S-0011-R7b-SM-EXUTH 60-69 years, female 155.5
GTEX-X261-0011-R7A-SM-4E3JJ 50-59 years, male 154.1
GTEX-1EU9M-0011-R7b-SM-9OSVU 60-69 years, male 149.1
GTEX-13QIC-0011-R7b-SM-GIN9M 60-69 years, female 146.1
GTEX-1H4P4-0011-R7b-SM-ARU77 50-59 years, male 145.1
GTEX-1GZ2Q-0011-R7b-SM-9OSWN 40-49 years, male 143.6
GTEX-12WSE-0011-R7a-SM-5PNWF 20-29 years, male 141.9
GTEX-NPJ7-0011-R7a-SM-EV79B 60-69 years, female 137.4
GTEX-1CB4H-0011-R7b-SM-CJI27 60-69 years, female 135.1
GTEX-ZV68-0011-R7a-SM-51MT4 50-59 years, female 124.9
GTEX-14LZ3-0011-R7a-SM-69LQN 60-69 years, female 124.0
GTEX-139TS-0011-R7a-SM-5K7X7 60-69 years, male 121.1
GTEX-1EH9U-0011-R7a-SM-9QEGU 60-69 years, male 119.6
GTEX-16XZZ-0011-R7b-SM-7MGVT 60-69 years, male 108.9
GTEX-1EN7A-0011-R7b-SM-9QEHX 40-49 years, male 103.0
GTEX-13OVL-0011-R7a-SM-5P9GW 50-59 years, male 102.8
GTEX-1C64N-0011-R7a-SM-7IGOI 50-59 years, male 101.9
GTEX-15G19-0011-R7b-SM-6M479 60-69 years, male 99.7
GTEX-1MA7X-0011-R7b-SM-EYYWS 60-69 years, male 98.1
GTEX-11EMC-0011-R7a-SM-GJ3PL 60-69 years, female 96.7
GTEX-13OVJ-0011-R7a-SM-5L3G1 50-59 years, female 96.3
GTEX-1HCU6-0011-R7b-SM-ARL77 60-69 years, female 94.3
GTEX-1H3VE-0011-R7b-SM-CE6S9 40-49 years, male 93.2
GTEX-1NV8Z-0011-R7a-SM-F3K4J 60-69 years, male 89.7
GTEX-1JMQL-0011-R7b-SM-F649W 50-59 years, female 88.4
GTEX-1F6I4-0011-R7a-SM-CJI24 60-69 years, male 80.4
GTEX-13N2G-0011-R7a-SM-5MR42 60-69 years, male 75.8
GTEX-X4XX-0011-R7A-SM-46MWR 60-69 years, male 73.2
GTEX-1LVA9-0011-R7a-SM-EYYWG 50-59 years, male 70.3
GTEX-1192W-0011-R7a-SM-GJ3PS 60-69 years, male 66.9
GTEX-1A8G6-0011-R7b-SM-7MXTV 60-69 years, male 61.0
GTEX-ZZPT-0011-R7a-SM-H7OH8 50-59 years, male 51.0
GTEX-1F75B-0011-R7a-SM-ARU84 50-59 years, male 50.1
GTEX-11ZVC-0011-R7b-SM-GI4VH 50-59 years, female 44.0
GTEX-1E2YA-0011-R7a-SM-CJI1Z 50-59 years, male 41.5
Show allShow less

PUTAMEN - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

2499.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Putamen
Scaled Tags Per Million: 2499.7
FF:10176-103C5 60 years, female 2499.7

PUTAMEN - Macaque RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

562.5
Macaque sample Sample description nTPM
Putamen
nTPM: 562.6
Samples: 2

Max nTPM: 596.8
Min nTPM: 528.3
Sample A 528.3
Sample B 596.8

PUTAMEN - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

451.2
Pig sample Sample description nTPM
Putamen
nTPM: 451.2
Samples: 3

Max nTPM: 550.5
Min nTPM: 354.9
Sample B Female 354.9
Sample C Male 550.5
Sample D Male 448.2

Contact

  • NEWS ARTICLES
  • PRESS ROOM

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
KAW logo The Human Protein Atlas project is funded
by the Knut and Alice Wallenberg Foundation.

Facebook logo X logo Bluesky logo Linkedin logo RSS feed logo contact@proteinatlas.org
GCBR logo Elixir core logo SciLifeLab logo Uppsala university logo KI logo KTH logo
We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.