Evolutionary view of NCDN across human, pig, rat, mouse and macaque - Staining in thalamus

THALAMUS - Expression summary

Mouse brain, Intensity
Thalamusⁱ

77.252

RNA expressionⁱ

HPA Brain:	555.4	nTPM
FANTOM5:	292.1	Scaled Tags Per Million

Macaque:	239.9	nTPM
Mouse:	334.0	nTPM
Rat:	612.5	nTPM
Pig:	278.3	nTPM

BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

THALAMUS - Mouse brain profileⁱ Protein expression in mouse brain using immunofluorescence is reported as fluorescence intensity. , antibody HPA023676
Thalamus mean intensity	77.252
	intensityⁱ Protein expression in mouse brain using immunofluorescence is reported as mean fluorescence intensity.	FRONT BACK
Medial geniculate nucleus	40.971
Parafascicular thalamic nucleus	-
Pregeniculate nucleus	42.240
Stria terminalis	51.657
Zona incerta	43.269
Anterodorsal thalamic nucleus	69.155
Reticular thalamic nucleus	30.068
Vental anterior thalamic nucleus	-
Medial habenular nucleus	36.321
Laterodorsal thalamic area	62.348
Paraventricular thalamic nucleus	77.252
Central medial thalamic area	72.161
Ventral lateral thalamic area	-
Ventral medial thalamic area	50.729
Lateral habenulal nucleus	61.797
Ventral posterior thalamus	56.798
Anterior pretactal nucleus	34.816
Retromammillary nucleus	38.594

THALAMUS - HPA Brain RNA-seq

Max subtype nTPMⁱ Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.	555.4

Sample id

Sample description

nTPM

Anterior thalamic nucleus, ventral
nTPM: 311.4

2032	Female, age 42, unknown	414.1
2497	Male, age 66, unknown	320.1
2396	Male, age 61, right hemisphere	200.1

Centromedial thalamic nucleus
nTPM: 316.6

2401	Male, age 76, right hemisphere	467.0
2279	Female, age 85, left hemisphere	166.2

Habenula
nTPM: 555.4

2203	Male, age 61, left hemisphere	689.8
1957	Male, age 80, both hemispheres	649.7
2276	Male, age 66, unknown	500.8
2252	Male, age 62, unknown	381.2

Lateral geniculate body
nTPM: 411.4

2106	Female, age 67, right hemisphere	872.0
2399	Male, age 61, left hemisphere	627.3
1953	Male, age 62, unknown	448.2
2035	Female, age 72, unknown	445.0
2857	Male, age 74, right hemisphere	298.3
2659	Male, age 66, unknown	245.1
2841	Male, age 80, both hemispheres	212.3
2575	Female, age 94, right hemisphere	142.7

Lateral thalamic nuclei
nTPM: 390.8

1903	Male, age 76, left hemisphere	558.4
2577	Male, age 74, both hemispheres	528.0
2765	Female, age 67, both hemispheres	369.5
2661	Female, age 72, unknown	304.8
2573	Female, age 94, left hemisphere	193.4

Medial dorsal thalamic nucleus
nTPM: 490.3

1971	Male, age 61, right hemisphere	745.4
2283	Male, age 80, right hemisphere	681.7
1859	Male, age 76, both hemispheres	607.6
2492	Male, age 75, right hemisphere	606.0
2498	Male, age 66, unknown	601.3
2026	Male, age 62, unknown	563.8
1810	Male, age 48, unknown	504.2
2576	Male, age 74, both hemispheres	478.6
2402	Female, age 67, both hemispheres	443.5
1930	Female, age 42, unknown	361.7
2039	Female, age 72, unknown	283.2
2660	Female, age 72, unknown	274.6
2572	Female, age 94, right hemisphere	221.8

Medial geniculate body
nTPM: 348.1

1811	Female, age 42, unknown	570.8
2207	Male, age 80, right hemisphere	431.5
2650	Female, age 94, left hemisphere	371.8
2657	Male, age 74, right hemisphere	353.1
2217	Female, age 72, unknown	280.5
2049	Male, age 76, both hemispheres	223.3
2571	Male, age 75, right hemisphere	205.6

Nucleus reuniens
nTPM: 198.6

2212	Female, age 67, left hemisphere	315.6
2205	Male, age 80, left hemisphere	179.0
2210	Female, age 85, left hemisphere	101.3

Nucleus rhomboideus
nTPM: 321.1

2206	Male, age 80, both hemispheres	661.0
2213	Female, age 67, left hemisphere	194.5
2280	Female, age 85, left hemisphere	108.0

Posterior thalamic nucleus
nTPM: 336.2

2266	Male, age 76, right hemisphere	486.1
2495	Female, age 67, right hemisphere	374.9
2655	Male, age 74, right hemisphere	374.4
2649	Female, age 94, both hemispheres	109.5

Pulvinar
nTPM: 469.9

2398	Male, age 61, left hemisphere	599.5
2496	Female, age 67, right hemisphere	555.4
1932	Male, age 80, right hemisphere	531.5
2214	Male, age 76, right hemisphere	507.0
1972	Male, age 62, unknown	491.0
2582	Female, age 72, unknown	481.6
1929	Male, age 48, unknown	420.0
2499	Male, age 66, unknown	403.8
1899	Female, age 42, unknown	371.7
2724	Male, age 74, right hemisphere	337.0

Subthalamic nucleus
nTPM: 208.9

2406	Female, age 72, unknown	283.5
2275	Male, age 66, unknown	249.4
2658	Male, age 74, both hemispheres	237.8
2124	Male, age 62, unknown	193.9
2216	Male, age 48, unknown	192.3
2779	Female, age 42, unknown	189.4
2282	Male, age 61, both hemispheres	174.5
2056	Female, age 72, unknown	150.2

Ventral posterolateral thalamic nucleus
nTPM: 451.1

2197	Male, age 80, both hemispheres	646.4
2578	Male, age 74, both hemispheres	523.7
2397	Male, age 61, right hemisphere	480.6
2740	Male, age 76, right hemisphere	476.6
2581	Female, age 72, unknown	314.3
2570	Male, age 75, right hemisphere	265.0

Ventral posteromedial thalamic nucleus
nTPM: 551.2

2202	Male, age 61, left hemisphere	851.7
2758	Male, age 80, both hemispheres	708.8
2653	Male, age 74, both hemispheres	597.0
2127	Male, age 76, right hemisphere	336.0
2281	Male, age 75, right hemisphere	262.4

Ventral thalamic nuclei
nTPM: 362.4

1860	Male, age 76, both hemispheres	472.3
2285	Male, age 62, unknown	471.9
1912	Female, age 42, unknown	399.2
1845	Male, age 48, unknown	380.0
2652	Male, age 74, left hemisphere	378.1
2204	Male, age 80, both hemispheres	343.3
2858	Female, age 72, unknown	306.8
2580	Male, age 66, unknown	268.7
2291	Female, age 72, unknown	240.8

Zona incerta
nTPM: 246.6

2208	Male, age 80, right hemisphere	408.8
2663	Female, age 72, unknown	276.1
2215	Male, age 66, unknown	200.4
2822	Male, age 74, right hemisphere	181.0
2403	Male, age 62, unknown	166.7

THALAMUS - FANTOM5 CAGEⁱ

Max subtype Scaled Tags Per Millionⁱ Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.	292.1

FANTOM5 sample id

Sample description

Scaled Tags Per Million

Thalamus
Scaled Tags Per Million: 292.1

FF:10154-103A1

76 years, female

292.1

THALAMUS - Macaque RNA-seq

Max subtype nTPMⁱ Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.	239.9

Macaque sample

Sample description

nTPM

Habenula
nTPM: 125.8

Samples: 1

Max nTPM: 125.8
Min nTPM: 125.8

Sample A

125.8

Lateral thalamic nuclei
nTPM: 144.3

Samples: 2

Max nTPM: 166.2
Min nTPM: 122.3

Sample A		166.2
Sample B		122.3

Thalamus
nTPM: 239.9

Samples: 2

Max nTPM: 322.0
Min nTPM: 157.8

Sample A		322.0
Sample B		157.8

THALAMUS - Pig RNA-seqⁱ

Max subtype nTPMⁱ Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.	278.3

Pig sample

Sample description

nTPM

Thalamus
nTPM: 278.3

Samples: 3

Max nTPM: 359.3
Min nTPM: 132.2

Sample A	Female	359.3
Sample C	Male	343.4
Sample D	Male	132.2

THALAMUS - Mouse RNA-seqⁱ

Max subtype nTPMⁱ Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.	334.0

Mouse sample

Sample description

nTPM

Thalamus
nTPM: 334.0

Samples: 4

Max nTPM: 380.9
Min nTPM: 281.2

Sample A		281.2
Sample B		380.9
Sample C		332.2
Sample D		341.5

THALAMUS - Rat RNA-seq

Max subtype nTPMⁱ Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.	612.5

Rat sample

Sample description

nTPM

Thalamus
nTPM: 612.5

Samples: 4

Max nTPM: 659.0
Min nTPM: 579.2

Sample A		588.7
Sample A		659.0
Sample A		623.2
Sample A		579.2