A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
7.0
nTPM
Monaco:
41.3
nTPM
Schmiedel:
63.4
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
7.0
HPA sample
nTPM
Memory B-cell nTPM: 6.4
Samples: 6
Max nTPM: 9.5
Min nTPM: 2.7
P10809_1017
6.0
P10809_1025
5.3
P10809_1044
2.7
P10809_1063
8.1
P10809_1092
6.9
P10809_1105
9.5
Naive B-cell nTPM: 7.0
Samples: 6
Max nTPM: 12.3
Min nTPM: 4.7
P10809_1011
5.3
P10809_1029
7.3
P10809_1048
12.3
P10809_1067
4.7
P10809_1091
5.4
P10809_1104
7.0
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
41.3
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 29.9
Samples: 4
Max nTPM: 45.7
Min nTPM: 14.3
RHH5310_R3677
19.9
RHH5218_R3590
45.7
RHH5247_R3619
14.3
RHH5276_R3648
39.9
Naive B-cell nTPM: 41.3
Samples: 4
Max nTPM: 47.8
Min nTPM: 33.6
RHH5308_R3675
36.1
RHH5216_R3588
33.6
RHH5245_R3617
47.8
RHH5274_R3646
47.6
Non-switched memory B-cell nTPM: 36.1
Samples: 4
Max nTPM: 47.4
Min nTPM: 26.5
RHH5309_R3676
26.5
RHH5217_R3589
41.1
RHH5246_R3618
29.3
RHH5275_R3647
47.4
Plasmablast nTPM: 32.9
Samples: 4
Max nTPM: 38.7
Min nTPM: 26.9
RHH5312_R3679
32.9
RHH5220_R3592
26.9
RHH5249_R3621
38.7
RHH5278_R3650
33.0
Switched memory B-cell nTPM: 36.0
Samples: 4
Max nTPM: 46.4
Min nTPM: 22.6
RHH5311_R3678
22.6
RHH5219_R3591
35.1
RHH5248_R3620
40.0
RHH5277_R3649
46.4
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
63.4
Schmiedel sample id
TPM
Naive B-cell TPM: 63.4
Samples: 91
Max TPM: 94.0
Min TPM: 37.0
B_CELL_NAIVE_1
94.0
B_CELL_NAIVE_2
89.4
B_CELL_NAIVE_3
88.3
B_CELL_NAIVE_4
85.6
B_CELL_NAIVE_5
82.7
B_CELL_NAIVE_6
81.5
B_CELL_NAIVE_7
80.5
B_CELL_NAIVE_8
79.6
B_CELL_NAIVE_9
79.0
B_CELL_NAIVE_10
78.2
B_CELL_NAIVE_11
76.3
B_CELL_NAIVE_12
75.6
B_CELL_NAIVE_13
74.1
B_CELL_NAIVE_14
74.0
B_CELL_NAIVE_15
73.5
B_CELL_NAIVE_16
72.9
B_CELL_NAIVE_17
72.5
B_CELL_NAIVE_18
72.5
B_CELL_NAIVE_19
72.2
B_CELL_NAIVE_20
72.0
B_CELL_NAIVE_21
71.6
B_CELL_NAIVE_22
71.4
B_CELL_NAIVE_23
71.4
B_CELL_NAIVE_24
70.9
B_CELL_NAIVE_25
69.9
B_CELL_NAIVE_26
69.7
B_CELL_NAIVE_27
69.7
B_CELL_NAIVE_28
69.1
B_CELL_NAIVE_29
68.7
B_CELL_NAIVE_30
68.4
B_CELL_NAIVE_31
67.9
B_CELL_NAIVE_32
66.8
B_CELL_NAIVE_33
66.1
B_CELL_NAIVE_34
65.9
B_CELL_NAIVE_35
65.6
B_CELL_NAIVE_36
65.5
B_CELL_NAIVE_37
65.4
B_CELL_NAIVE_38
65.2
B_CELL_NAIVE_39
64.6
B_CELL_NAIVE_40
64.6
B_CELL_NAIVE_41
64.0
B_CELL_NAIVE_42
63.5
B_CELL_NAIVE_43
63.3
B_CELL_NAIVE_44
62.9
B_CELL_NAIVE_45
62.4
B_CELL_NAIVE_46
62.3
B_CELL_NAIVE_47
62.2
B_CELL_NAIVE_48
61.9
B_CELL_NAIVE_49
61.3
B_CELL_NAIVE_50
61.2
B_CELL_NAIVE_51
61.0
B_CELL_NAIVE_52
60.8
B_CELL_NAIVE_53
60.7
B_CELL_NAIVE_54
60.3
B_CELL_NAIVE_55
59.5
B_CELL_NAIVE_56
58.7
B_CELL_NAIVE_57
58.2
B_CELL_NAIVE_58
58.1
B_CELL_NAIVE_59
57.7
B_CELL_NAIVE_60
57.4
B_CELL_NAIVE_61
57.4
B_CELL_NAIVE_62
56.9
B_CELL_NAIVE_63
56.8
B_CELL_NAIVE_64
56.8
B_CELL_NAIVE_65
56.7
B_CELL_NAIVE_66
56.1
B_CELL_NAIVE_67
56.0
B_CELL_NAIVE_68
55.8
B_CELL_NAIVE_69
55.8
B_CELL_NAIVE_70
55.8
B_CELL_NAIVE_71
55.5
B_CELL_NAIVE_72
55.3
B_CELL_NAIVE_73
54.9
B_CELL_NAIVE_74
54.9
B_CELL_NAIVE_75
53.8
B_CELL_NAIVE_76
53.1
B_CELL_NAIVE_77
52.9
B_CELL_NAIVE_78
52.8
B_CELL_NAIVE_79
52.6
B_CELL_NAIVE_80
52.2
B_CELL_NAIVE_81
52.0
B_CELL_NAIVE_82
51.1
B_CELL_NAIVE_83
49.9
B_CELL_NAIVE_84
49.8
B_CELL_NAIVE_85
49.5
B_CELL_NAIVE_86
49.4
B_CELL_NAIVE_87
47.6
B_CELL_NAIVE_88
45.3
B_CELL_NAIVE_89
45.3
B_CELL_NAIVE_90
44.4
B_CELL_NAIVE_91
37.0
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The Human Protein Atlas project is funded
