A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
10.0
nTPM
Monaco:
42.8
nTPM
Schmiedel:
38.9
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
10.0
HPA sample
nTPM
Classical monocyte nTPM: 8.0
Samples: 6
Max nTPM: 14.9
Min nTPM: 5.1
P10809_1003
5.8
P10809_1020
8.4
P10809_1039
8.0
P10809_1058
5.6
P10809_1080
14.9
P10809_1107
5.1
Intermediate monocyte nTPM: 10.0
Samples: 6
Max nTPM: 26.2
Min nTPM: 5.4
P10809_1004
7.1
P10809_1023
5.5
P10809_1042
8.4
P10809_1061
26.2
P10809_1081
7.3
P10809_1108
5.4
Non-classical monocyte nTPM: 8.5
Samples: 5
Max nTPM: 17.8
Min nTPM: 4.5
P10809_1005
6.5
P10809_1053
7.4
P10809_1072
17.8
P10809_1082
6.2
P10809_1109
4.5
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
42.8
Monaco sample
nTPM
Classical monocyte nTPM: 42.9
Samples: 4
Max nTPM: 56.8
Min nTPM: 24.7
RHH5313_R3680
24.7
RHH5221_R3593
56.8
RHH5250_R3622
49.3
RHH5279_R3651
40.6
Intermediate monocyte nTPM: 32.7
Samples: 4
Max nTPM: 43.3
Min nTPM: 25.7
RHH5314_R3681
25.7
RHH5222_R3594
26.7
RHH5251_R3623
34.9
RHH5280_R3652
43.3
Non-classical monocyte nTPM: 33.7
Samples: 4
Max nTPM: 40.7
Min nTPM: 24.0
RHH5315_R3682
24.0
RHH5223_R3595
37.0
RHH5252_R3624
33.1
RHH5281_R3653
40.7
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
38.9
Schmiedel sample id
TPM
Classical monocyte TPM: 25.5
Samples: 91
Max TPM: 38.1
Min TPM: 15.9
MONOCYTES_1
38.1
MONOCYTES_2
35.2
MONOCYTES_3
34.5
MONOCYTES_4
34.2
MONOCYTES_5
33.3
MONOCYTES_6
33.1
MONOCYTES_7
33.1
MONOCYTES_8
32.7
MONOCYTES_9
32.5
MONOCYTES_10
31.8
MONOCYTES_11
31.8
MONOCYTES_12
31.2
MONOCYTES_13
30.9
MONOCYTES_14
30.9
MONOCYTES_15
30.8
MONOCYTES_16
30.5
MONOCYTES_17
29.8
MONOCYTES_18
29.6
MONOCYTES_19
29.4
MONOCYTES_20
29.4
MONOCYTES_21
28.9
MONOCYTES_22
28.9
MONOCYTES_23
28.7
MONOCYTES_24
28.3
MONOCYTES_25
28.3
MONOCYTES_26
28.1
MONOCYTES_27
27.9
MONOCYTES_28
27.9
MONOCYTES_29
27.7
MONOCYTES_30
27.4
MONOCYTES_31
27.2
MONOCYTES_32
27.1
MONOCYTES_33
27.0
MONOCYTES_34
26.5
MONOCYTES_35
26.3
MONOCYTES_36
26.1
MONOCYTES_37
25.7
MONOCYTES_38
25.3
MONOCYTES_39
25.3
MONOCYTES_40
25.2
MONOCYTES_41
25.1
MONOCYTES_42
25.0
MONOCYTES_43
24.9
MONOCYTES_44
24.9
MONOCYTES_45
24.8
MONOCYTES_46
24.7
MONOCYTES_47
24.6
MONOCYTES_48
24.6
MONOCYTES_49
24.5
MONOCYTES_50
24.4
MONOCYTES_51
24.2
MONOCYTES_52
24.0
MONOCYTES_53
24.0
MONOCYTES_54
23.9
MONOCYTES_55
23.7
MONOCYTES_56
23.5
MONOCYTES_57
23.4
MONOCYTES_58
23.4
MONOCYTES_59
23.3
MONOCYTES_60
23.3
MONOCYTES_61
23.3
MONOCYTES_62
23.0
MONOCYTES_63
22.8
MONOCYTES_64
22.6
MONOCYTES_65
22.4
MONOCYTES_66
22.2
MONOCYTES_67
22.2
MONOCYTES_68
21.9
MONOCYTES_69
21.9
MONOCYTES_70
21.9
MONOCYTES_71
21.9
MONOCYTES_72
21.8
MONOCYTES_73
21.6
MONOCYTES_74
21.5
MONOCYTES_75
21.5
MONOCYTES_76
21.4
MONOCYTES_77
21.4
MONOCYTES_78
21.3
MONOCYTES_79
20.9
MONOCYTES_80
20.5
MONOCYTES_81
20.5
MONOCYTES_82
20.5
MONOCYTES_83
20.3
MONOCYTES_84
20.2
MONOCYTES_85
19.9
MONOCYTES_86
19.5
MONOCYTES_87
19.4
MONOCYTES_88
19.0
MONOCYTES_89
18.6
MONOCYTES_90
18.4
MONOCYTES_91
15.9
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Non-classical monocyte TPM: 38.9
Samples: 90
Max TPM: 61.5
Min TPM: 20.8
M2_1
61.5
M2_2
59.4
M2_3
56.3
M2_4
55.8
M2_5
55.5
M2_6
54.3
M2_7
54.0
M2_8
53.5
M2_9
52.0
M2_10
51.7
M2_11
49.3
M2_12
49.3
M2_13
49.2
M2_14
48.6
M2_15
47.8
M2_16
47.4
M2_17
46.1
M2_18
45.4
M2_19
45.3
M2_20
45.1
M2_21
45.0
M2_22
44.2
M2_23
43.7
M2_24
42.9
M2_25
42.6
M2_26
42.6
M2_27
42.1
M2_28
41.9
M2_29
41.9
M2_30
41.7
M2_31
41.6
M2_32
40.5
M2_33
40.4
M2_34
40.3
M2_35
40.2
M2_36
40.1
M2_37
39.4
M2_38
39.3
M2_39
39.1
M2_40
39.0
M2_41
38.9
M2_42
38.8
M2_43
38.8
M2_44
38.4
M2_45
38.2
M2_46
38.1
M2_47
38.0
M2_48
37.5
M2_49
37.3
M2_50
37.0
M2_51
36.8
M2_52
36.6
M2_53
36.3
M2_54
36.3
M2_55
36.2
M2_56
36.1
M2_57
36.0
M2_58
35.7
M2_59
35.3
M2_60
34.2
M2_61
33.8
M2_62
33.8
M2_63
33.6
M2_64
33.3
M2_65
33.0
M2_66
32.6
M2_67
32.4
M2_68
32.1
M2_69
32.0
M2_70
31.5
M2_71
31.2
M2_72
31.0
M2_73
31.0
M2_74
31.0
M2_75
30.4
M2_76
30.1
M2_77
29.9
M2_78
29.7
M2_79
29.6
M2_80
29.5
M2_81
29.3
M2_82
29.3
M2_83
28.7
M2_84
28.7
M2_85
28.2
M2_86
27.6
M2_87
26.9
M2_88
26.0
M2_89
23.9
M2_90
20.8
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