A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
3.9
nTPM
Monaco:
21.6
nTPM
Schmiedel:
30.6
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
3.9
HPA sample
nTPM
NK-cell nTPM: 3.9
Samples: 6
Max nTPM: 7.2
Min nTPM: 0.3
P10809_1013
4.6
P10809_1033
4.0
P10809_1052
1.3
P10809_1071
6.2
P10809_1093
0.3
P10809_1103
7.2
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
21.6
Monaco sample
nTPM
NK-cell nTPM: 21.6
Samples: 4
Max nTPM: 22.8
Min nTPM: 20.7
RHH5316_R3683
21.1
RHH5224_R3596
20.7
RHH5253_R3625
21.9
RHH5282_R3654
22.8
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
30.6
Schmiedel sample id
TPM
NK-cell TPM: 30.6
Samples: 90
Max TPM: 66.6
Min TPM: 19.7
NK_1
66.6
NK_2
59.5
NK_3
53.8
NK_4
45.9
NK_5
42.3
NK_6
41.4
NK_7
40.7
NK_8
39.5
NK_9
38.7
NK_10
38.6
NK_11
37.8
NK_12
37.4
NK_13
37.3
NK_14
36.4
NK_15
35.6
NK_16
35.6
NK_17
35.3
NK_18
35.2
NK_19
35.2
NK_20
34.7
NK_21
34.7
NK_22
34.3
NK_23
33.8
NK_24
33.4
NK_25
32.8
NK_26
32.8
NK_27
32.6
NK_28
31.8
NK_29
31.8
NK_30
31.7
NK_31
31.5
NK_32
31.5
NK_33
31.4
NK_34
31.2
NK_35
31.2
NK_36
31.1
NK_37
30.6
NK_38
30.4
NK_39
30.3
NK_40
30.3
NK_41
30.2
NK_42
30.0
NK_43
29.8
NK_44
29.6
NK_45
28.6
NK_46
28.1
NK_47
27.9
NK_48
27.9
NK_49
27.6
NK_50
27.5
NK_51
27.5
NK_52
27.4
NK_53
27.3
NK_54
27.3
NK_55
27.3
NK_56
27.1
NK_57
26.8
NK_58
26.8
NK_59
26.8
NK_60
26.6
NK_61
26.6
NK_62
26.6
NK_63
26.5
NK_64
26.5
NK_65
26.4
NK_66
26.3
NK_67
26.2
NK_68
25.9
NK_69
25.6
NK_70
25.3
NK_71
25.2
NK_72
25.2
NK_73
25.1
NK_74
25.0
NK_75
24.9
NK_76
24.9
NK_77
24.9
NK_78
24.8
NK_79
24.0
NK_80
23.7
NK_81
23.6
NK_82
23.6
NK_83
23.6
NK_84
22.3
NK_85
22.3
NK_86
22.1
NK_87
22.0
NK_88
21.8
NK_89
21.5
NK_90
19.7
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