A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
4.9
nTPM
Monaco:
36.4
nTPM
Schmiedel:
55.6
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
4.9
HPA sample
nTPM
Classical monocyte nTPM: 3.3
Samples: 6
Max nTPM: 4.9
Min nTPM: 2.2
P10809_1003
4.9
P10809_1020
4.3
P10809_1039
2.3
P10809_1058
2.2
P10809_1080
3.4
P10809_1107
3.0
Intermediate monocyte nTPM: 4.9
Samples: 6
Max nTPM: 9.5
Min nTPM: 2.7
P10809_1004
5.5
P10809_1023
2.7
P10809_1042
4.7
P10809_1061
9.5
P10809_1081
3.0
P10809_1108
3.9
Non-classical monocyte nTPM: 3.8
Samples: 5
Max nTPM: 5.6
Min nTPM: 2.5
P10809_1005
5.6
P10809_1053
4.0
P10809_1072
2.5
P10809_1082
2.8
P10809_1109
4.0
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
36.4
Monaco sample
nTPM
Classical monocyte nTPM: 27.9
Samples: 4
Max nTPM: 36.2
Min nTPM: 21.1
RHH5313_R3680
25.8
RHH5221_R3593
21.1
RHH5250_R3622
28.3
RHH5279_R3651
36.2
Intermediate monocyte nTPM: 29.5
Samples: 4
Max nTPM: 37.8
Min nTPM: 23.5
RHH5314_R3681
27.4
RHH5222_R3594
29.4
RHH5251_R3623
23.5
RHH5280_R3652
37.8
Non-classical monocyte nTPM: 36.4
Samples: 4
Max nTPM: 41.5
Min nTPM: 33.9
RHH5315_R3682
34.2
RHH5223_R3595
41.5
RHH5252_R3624
33.9
RHH5281_R3653
36.0
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
55.6
Schmiedel sample id
TPM
Classical monocyte TPM: 26.0
Samples: 91
Max TPM: 40.1
Min TPM: 16.8
MONOCYTES_1
40.1
MONOCYTES_2
38.0
MONOCYTES_3
35.5
MONOCYTES_4
34.3
MONOCYTES_5
33.1
MONOCYTES_6
31.9
MONOCYTES_7
31.6
MONOCYTES_8
31.5
MONOCYTES_9
31.5
MONOCYTES_10
31.4
MONOCYTES_11
31.4
MONOCYTES_12
31.3
MONOCYTES_13
31.3
MONOCYTES_14
30.7
MONOCYTES_15
30.6
MONOCYTES_16
30.6
MONOCYTES_17
30.4
MONOCYTES_18
30.3
MONOCYTES_19
30.2
MONOCYTES_20
30.1
MONOCYTES_21
29.9
MONOCYTES_22
29.5
MONOCYTES_23
29.5
MONOCYTES_24
29.2
MONOCYTES_25
29.2
MONOCYTES_26
28.9
MONOCYTES_27
28.8
MONOCYTES_28
28.7
MONOCYTES_29
28.5
MONOCYTES_30
28.2
MONOCYTES_31
28.0
MONOCYTES_32
27.9
MONOCYTES_33
27.9
MONOCYTES_34
27.7
MONOCYTES_35
27.6
MONOCYTES_36
27.6
MONOCYTES_37
27.1
MONOCYTES_38
26.9
MONOCYTES_39
26.6
MONOCYTES_40
26.3
MONOCYTES_41
26.2
MONOCYTES_42
26.0
MONOCYTES_43
25.9
MONOCYTES_44
25.8
MONOCYTES_45
25.6
MONOCYTES_46
25.6
MONOCYTES_47
25.6
MONOCYTES_48
25.5
MONOCYTES_49
25.4
MONOCYTES_50
25.1
MONOCYTES_51
25.0
MONOCYTES_52
25.0
MONOCYTES_53
24.8
MONOCYTES_54
24.4
MONOCYTES_55
24.3
MONOCYTES_56
24.0
MONOCYTES_57
24.0
MONOCYTES_58
24.0
MONOCYTES_59
23.8
MONOCYTES_60
23.7
MONOCYTES_61
23.5
MONOCYTES_62
23.5
MONOCYTES_63
23.5
MONOCYTES_64
23.4
MONOCYTES_65
23.4
MONOCYTES_66
23.4
MONOCYTES_67
23.4
MONOCYTES_68
23.0
MONOCYTES_69
22.8
MONOCYTES_70
22.4
MONOCYTES_71
22.4
MONOCYTES_72
22.4
MONOCYTES_73
22.1
MONOCYTES_74
22.1
MONOCYTES_75
22.0
MONOCYTES_76
21.8
MONOCYTES_77
21.4
MONOCYTES_78
21.4
MONOCYTES_79
21.3
MONOCYTES_80
20.8
MONOCYTES_81
20.7
MONOCYTES_82
19.7
MONOCYTES_83
19.5
MONOCYTES_84
19.0
MONOCYTES_85
18.6
MONOCYTES_86
18.0
MONOCYTES_87
17.8
MONOCYTES_88
17.5
MONOCYTES_89
17.3
MONOCYTES_90
17.1
MONOCYTES_91
16.8
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Non-classical monocyte TPM: 55.7
Samples: 90
Max TPM: 88.3
Min TPM: 30.5
M2_1
88.3
M2_2
87.3
M2_3
82.2
M2_4
74.4
M2_5
74.2
M2_6
71.7
M2_7
71.4
M2_8
69.2
M2_9
67.7
M2_10
67.3
M2_11
67.1
M2_12
67.1
M2_13
67.0
M2_14
66.8
M2_15
65.7
M2_16
64.7
M2_17
64.1
M2_18
63.9
M2_19
63.1
M2_20
62.9
M2_21
62.8
M2_22
62.6
M2_23
62.5
M2_24
62.5
M2_25
62.4
M2_26
61.7
M2_27
61.2
M2_28
59.3
M2_29
58.9
M2_30
58.1
M2_31
57.8
M2_32
57.6
M2_33
57.3
M2_34
56.0
M2_35
55.9
M2_36
55.8
M2_37
55.7
M2_38
55.6
M2_39
55.4
M2_40
55.3
M2_41
55.3
M2_42
55.1
M2_43
55.0
M2_44
54.4
M2_45
54.0
M2_46
53.8
M2_47
53.7
M2_48
53.6
M2_49
53.5
M2_50
53.3
M2_51
53.1
M2_52
53.0
M2_53
52.3
M2_54
52.2
M2_55
51.1
M2_56
51.0
M2_57
51.0
M2_58
50.8
M2_59
50.2
M2_60
50.2
M2_61
50.1
M2_62
49.7
M2_63
49.6
M2_64
49.4
M2_65
49.3
M2_66
49.1
M2_67
49.0
M2_68
48.6
M2_69
48.3
M2_70
48.2
M2_71
47.6
M2_72
47.2
M2_73
47.2
M2_74
46.9
M2_75
46.6
M2_76
46.0
M2_77
45.8
M2_78
45.7
M2_79
44.6
M2_80
44.6
M2_81
44.4
M2_82
44.1
M2_83
43.7
M2_84
43.6
M2_85
43.1
M2_86
42.7
M2_87
42.0
M2_88
42.0
M2_89
41.8
M2_90
30.5
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