A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
11.0
nTPM
Monaco:
146.6
nTPM
Schmiedel:
111.9
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
11.0
HPA sample
nTPM
NK-cell nTPM: 11.0
Samples: 6
Max nTPM: 20.5
Min nTPM: 2.1
P10809_1013
17.3
P10809_1033
20.5
P10809_1052
12.8
P10809_1071
2.9
P10809_1093
2.1
P10809_1103
10.4
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
146.6
Monaco sample
nTPM
NK-cell nTPM: 146.5
Samples: 4
Max nTPM: 170.7
Min nTPM: 124.9
RHH5316_R3683
153.2
RHH5224_R3596
170.7
RHH5253_R3625
124.9
RHH5282_R3654
137.4
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
111.9
Schmiedel sample id
TPM
NK-cell TPM: 111.9
Samples: 90
Max TPM: 280.6
Min TPM: 20.4
NK_1
280.6
NK_2
271.2
NK_3
263.3
NK_4
247.2
NK_5
240.0
NK_6
219.0
NK_7
208.9
NK_8
183.8
NK_9
183.5
NK_10
182.6
NK_11
169.1
NK_12
161.3
NK_13
160.4
NK_14
157.1
NK_15
156.2
NK_16
154.9
NK_17
147.7
NK_18
147.6
NK_19
145.7
NK_20
145.5
NK_21
143.9
NK_22
143.6
NK_23
142.0
NK_24
138.8
NK_25
137.2
NK_26
137.2
NK_27
137.0
NK_28
135.0
NK_29
133.4
NK_30
132.4
NK_31
131.7
NK_32
131.3
NK_33
130.3
NK_34
129.2
NK_35
128.5
NK_36
127.3
NK_37
124.4
NK_38
122.6
NK_39
120.8
NK_40
119.9
NK_41
115.9
NK_42
115.4
NK_43
115.3
NK_44
113.7
NK_45
109.5
NK_46
108.7
NK_47
102.5
NK_48
102.0
NK_49
99.4
NK_50
99.1
NK_51
95.6
NK_52
94.8
NK_53
93.2
NK_54
90.3
NK_55
84.9
NK_56
81.9
NK_57
80.8
NK_58
80.3
NK_59
79.3
NK_60
78.1
NK_61
77.6
NK_62
76.6
NK_63
75.5
NK_64
73.9
NK_65
73.4
NK_66
73.3
NK_67
72.9
NK_68
71.0
NK_69
68.3
NK_70
68.3
NK_71
66.0
NK_72
65.3
NK_73
60.9
NK_74
59.4
NK_75
58.5
NK_76
56.5
NK_77
52.0
NK_78
50.0
NK_79
48.6
NK_80
48.2
NK_81
48.0
NK_82
47.4
NK_83
45.3
NK_84
44.7
NK_85
34.3
NK_86
32.9
NK_87
31.7
NK_88
30.6
NK_89
28.9
NK_90
20.4
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