A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
11.6
nTPM
Monaco:
64.0
nTPM
Schmiedel:
21.1
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
11.6
HPA sample
nTPM
Classical monocyte nTPM: 3.6
Samples: 6
Max nTPM: 8.5
Min nTPM: 1.0
P10809_1003
8.5
P10809_1020
2.2
P10809_1039
1.0
P10809_1058
2.6
P10809_1080
3.4
P10809_1107
4.0
Intermediate monocyte nTPM: 4.7
Samples: 6
Max nTPM: 10.0
Min nTPM: 1.5
P10809_1004
10.0
P10809_1023
3.9
P10809_1042
4.5
P10809_1061
1.5
P10809_1081
3.3
P10809_1108
4.9
Non-classical monocyte nTPM: 11.6
Samples: 5
Max nTPM: 26.2
Min nTPM: 3.7
P10809_1005
12.1
P10809_1053
8.8
P10809_1072
26.2
P10809_1082
3.7
P10809_1109
7.2
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
64.0
Monaco sample
nTPM
Classical monocyte nTPM: 24.8
Samples: 4
Max nTPM: 27.9
Min nTPM: 17.3
RHH5313_R3680
27.8
RHH5221_R3593
27.9
RHH5250_R3622
17.3
RHH5279_R3651
26.0
Intermediate monocyte nTPM: 51.8
Samples: 4
Max nTPM: 93.6
Min nTPM: 22.3
RHH5314_R3681
40.2
RHH5222_R3594
93.6
RHH5251_R3623
22.3
RHH5280_R3652
50.9
Non-classical monocyte nTPM: 64.0
Samples: 4
Max nTPM: 94.7
Min nTPM: 38.8
RHH5315_R3682
52.8
RHH5223_R3595
94.7
RHH5252_R3624
38.8
RHH5281_R3653
69.8
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
21.1
Schmiedel sample id
TPM
Classical monocyte TPM: 10.8
Samples: 91
Max TPM: 20.7
Min TPM: 3.1
MONOCYTES_1
20.7
MONOCYTES_2
19.6
MONOCYTES_3
19.0
MONOCYTES_4
18.2
MONOCYTES_5
18.0
MONOCYTES_6
16.1
MONOCYTES_7
16.0
MONOCYTES_8
15.9
MONOCYTES_9
15.9
MONOCYTES_10
15.8
MONOCYTES_11
15.6
MONOCYTES_12
15.5
MONOCYTES_13
15.4
MONOCYTES_14
15.4
MONOCYTES_15
15.3
MONOCYTES_16
15.2
MONOCYTES_17
15.1
MONOCYTES_18
15.0
MONOCYTES_19
14.7
MONOCYTES_20
14.2
MONOCYTES_21
14.2
MONOCYTES_22
14.0
MONOCYTES_23
13.9
MONOCYTES_24
13.9
MONOCYTES_25
13.8
MONOCYTES_26
13.8
MONOCYTES_27
13.5
MONOCYTES_28
13.5
MONOCYTES_29
13.2
MONOCYTES_30
13.0
MONOCYTES_31
12.7
MONOCYTES_32
12.7
MONOCYTES_33
12.5
MONOCYTES_34
12.4
MONOCYTES_35
12.3
MONOCYTES_36
12.2
MONOCYTES_37
12.1
MONOCYTES_38
12.0
MONOCYTES_39
11.5
MONOCYTES_40
11.4
MONOCYTES_41
11.2
MONOCYTES_42
11.2
MONOCYTES_43
11.0
MONOCYTES_44
10.9
MONOCYTES_45
10.9
MONOCYTES_46
10.6
MONOCYTES_47
10.2
MONOCYTES_48
10.0
MONOCYTES_49
9.9
MONOCYTES_50
9.8
MONOCYTES_51
9.7
MONOCYTES_52
9.7
MONOCYTES_53
9.6
MONOCYTES_54
9.5
MONOCYTES_55
9.5
MONOCYTES_56
9.5
MONOCYTES_57
9.4
MONOCYTES_58
9.4
MONOCYTES_59
9.4
MONOCYTES_60
9.0
MONOCYTES_61
8.9
MONOCYTES_62
8.9
MONOCYTES_63
8.8
MONOCYTES_64
8.5
MONOCYTES_65
8.5
MONOCYTES_66
8.4
MONOCYTES_67
8.0
MONOCYTES_68
7.7
MONOCYTES_69
7.6
MONOCYTES_70
7.6
MONOCYTES_71
7.0
MONOCYTES_72
7.0
MONOCYTES_73
6.7
MONOCYTES_74
6.7
MONOCYTES_75
6.5
MONOCYTES_76
6.2
MONOCYTES_77
5.9
MONOCYTES_78
5.9
MONOCYTES_79
5.8
MONOCYTES_80
5.4
MONOCYTES_81
5.1
MONOCYTES_82
5.1
MONOCYTES_83
5.0
MONOCYTES_84
4.9
MONOCYTES_85
4.9
MONOCYTES_86
4.7
MONOCYTES_87
4.6
MONOCYTES_88
4.6
MONOCYTES_89
4.3
MONOCYTES_90
4.1
MONOCYTES_91
3.1
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Non-classical monocyte TPM: 21.1
Samples: 90
Max TPM: 50.0
Min TPM: 3.5
M2_1
50.0
M2_2
46.6
M2_3
43.4
M2_4
38.8
M2_5
38.1
M2_6
37.3
M2_7
37.0
M2_8
36.2
M2_9
36.0
M2_10
34.9
M2_11
33.4
M2_12
33.4
M2_13
31.8
M2_14
30.9
M2_15
30.7
M2_16
30.5
M2_17
30.0
M2_18
29.4
M2_19
28.7
M2_20
27.6
M2_21
27.4
M2_22
27.2
M2_23
26.9
M2_24
26.0
M2_25
25.5
M2_26
24.9
M2_27
24.9
M2_28
24.8
M2_29
24.4
M2_30
24.2
M2_31
24.2
M2_32
24.0
M2_33
23.8
M2_34
23.6
M2_35
23.3
M2_36
23.2
M2_37
22.9
M2_38
22.2
M2_39
22.2
M2_40
22.2
M2_41
21.6
M2_42
21.5
M2_43
21.4
M2_44
21.4
M2_45
21.2
M2_46
20.8
M2_47
20.6
M2_48
20.1
M2_49
20.0
M2_50
19.3
M2_51
19.2
M2_52
19.0
M2_53
18.4
M2_54
18.4
M2_55
18.0
M2_56
17.6
M2_57
17.5
M2_58
17.0
M2_59
16.5
M2_60
15.8
M2_61
15.1
M2_62
14.9
M2_63
14.8
M2_64
14.3
M2_65
14.1
M2_66
13.9
M2_67
13.4
M2_68
13.3
M2_69
13.3
M2_70
12.9
M2_71
12.7
M2_72
11.9
M2_73
11.9
M2_74
11.7
M2_75
11.4
M2_76
11.2
M2_77
11.0
M2_78
9.9
M2_79
9.4
M2_80
9.3
M2_81
9.1
M2_82
8.4
M2_83
8.4
M2_84
8.3
M2_85
6.8
M2_86
6.5
M2_87
6.1
M2_88
5.7
M2_89
4.8
M2_90
3.5
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