A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
35.8
nTPM
Monaco:
463.2
nTPM
Schmiedel:
97.4
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
35.8
HPA sample
nTPM
Memory B-cell nTPM: 35.9
Samples: 6
Max nTPM: 63.1
Min nTPM: 14.4
P10809_1017
41.3
P10809_1025
63.1
P10809_1044
14.4
P10809_1063
23.3
P10809_1092
38.3
P10809_1105
34.7
Naive B-cell nTPM: 30.5
Samples: 6
Max nTPM: 45.2
Min nTPM: 14.3
P10809_1011
35.9
P10809_1029
32.7
P10809_1048
17.8
P10809_1067
14.3
P10809_1091
45.2
P10809_1104
36.8
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
463.2
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 370.0
Samples: 4
Max nTPM: 419.1
Min nTPM: 262.7
RHH5310_R3677
262.7
RHH5218_R3590
419.1
RHH5247_R3619
393.1
RHH5276_R3648
405.0
Naive B-cell nTPM: 371.2
Samples: 4
Max nTPM: 504.3
Min nTPM: 229.4
RHH5308_R3675
229.4
RHH5216_R3588
408.3
RHH5245_R3617
504.3
RHH5274_R3646
342.7
Non-switched memory B-cell nTPM: 351.1
Samples: 4
Max nTPM: 460.5
Min nTPM: 278.3
RHH5309_R3676
278.3
RHH5217_R3589
305.9
RHH5246_R3618
460.5
RHH5275_R3647
359.5
Plasmablast nTPM: 463.3
Samples: 4
Max nTPM: 574.7
Min nTPM: 282.5
RHH5312_R3679
282.5
RHH5220_R3592
574.7
RHH5249_R3621
450.9
RHH5278_R3650
544.9
Switched memory B-cell nTPM: 288.7
Samples: 4
Max nTPM: 454.3
Min nTPM: 101.8
RHH5311_R3678
101.8
RHH5219_R3591
454.3
RHH5248_R3620
206.9
RHH5277_R3649
391.7
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
97.4
Schmiedel sample id
TPM
Naive B-cell TPM: 97.4
Samples: 91
Max TPM: 125.5
Min TPM: 55.9
B_CELL_NAIVE_1
125.5
B_CELL_NAIVE_2
125.4
B_CELL_NAIVE_3
121.2
B_CELL_NAIVE_4
120.6
B_CELL_NAIVE_5
118.4
B_CELL_NAIVE_6
115.4
B_CELL_NAIVE_7
114.5
B_CELL_NAIVE_8
114.3
B_CELL_NAIVE_9
111.2
B_CELL_NAIVE_10
109.7
B_CELL_NAIVE_11
108.9
B_CELL_NAIVE_12
107.6
B_CELL_NAIVE_13
107.2
B_CELL_NAIVE_14
106.8
B_CELL_NAIVE_15
105.9
B_CELL_NAIVE_16
105.0
B_CELL_NAIVE_17
104.4
B_CELL_NAIVE_18
104.3
B_CELL_NAIVE_19
103.8
B_CELL_NAIVE_20
103.5
B_CELL_NAIVE_21
103.1
B_CELL_NAIVE_22
102.9
B_CELL_NAIVE_23
102.6
B_CELL_NAIVE_24
102.2
B_CELL_NAIVE_25
101.8
B_CELL_NAIVE_26
101.5
B_CELL_NAIVE_27
101.1
B_CELL_NAIVE_28
101.0
B_CELL_NAIVE_29
100.5
B_CELL_NAIVE_30
100.4
B_CELL_NAIVE_31
100.1
B_CELL_NAIVE_32
99.7
B_CELL_NAIVE_33
99.7
B_CELL_NAIVE_34
99.5
B_CELL_NAIVE_35
99.0
B_CELL_NAIVE_36
98.8
B_CELL_NAIVE_37
98.7
B_CELL_NAIVE_38
98.7
B_CELL_NAIVE_39
98.1
B_CELL_NAIVE_40
98.0
B_CELL_NAIVE_41
97.9
B_CELL_NAIVE_42
97.8
B_CELL_NAIVE_43
97.6
B_CELL_NAIVE_44
97.2
B_CELL_NAIVE_45
97.1
B_CELL_NAIVE_46
96.9
B_CELL_NAIVE_47
96.9
B_CELL_NAIVE_48
96.9
B_CELL_NAIVE_49
96.4
B_CELL_NAIVE_50
95.9
B_CELL_NAIVE_51
95.6
B_CELL_NAIVE_52
94.6
B_CELL_NAIVE_53
94.5
B_CELL_NAIVE_54
94.3
B_CELL_NAIVE_55
94.1
B_CELL_NAIVE_56
93.9
B_CELL_NAIVE_57
93.8
B_CELL_NAIVE_58
93.4
B_CELL_NAIVE_59
93.4
B_CELL_NAIVE_60
93.2
B_CELL_NAIVE_61
93.0
B_CELL_NAIVE_62
92.5
B_CELL_NAIVE_63
92.5
B_CELL_NAIVE_64
92.4
B_CELL_NAIVE_65
92.4
B_CELL_NAIVE_66
92.3
B_CELL_NAIVE_67
91.9
B_CELL_NAIVE_68
91.7
B_CELL_NAIVE_69
91.0
B_CELL_NAIVE_70
90.0
B_CELL_NAIVE_71
89.9
B_CELL_NAIVE_72
89.7
B_CELL_NAIVE_73
89.3
B_CELL_NAIVE_74
89.3
B_CELL_NAIVE_75
89.1
B_CELL_NAIVE_76
89.0
B_CELL_NAIVE_77
88.4
B_CELL_NAIVE_78
88.2
B_CELL_NAIVE_79
88.1
B_CELL_NAIVE_80
87.7
B_CELL_NAIVE_81
87.5
B_CELL_NAIVE_82
87.4
B_CELL_NAIVE_83
86.7
B_CELL_NAIVE_84
85.7
B_CELL_NAIVE_85
85.4
B_CELL_NAIVE_86
85.1
B_CELL_NAIVE_87
83.6
B_CELL_NAIVE_88
81.5
B_CELL_NAIVE_89
81.3
B_CELL_NAIVE_90
81.1
B_CELL_NAIVE_91
55.9
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The Human Protein Atlas project is funded
