A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
54.6
nTPM
Monaco:
342.7
nTPM
Schmiedel:
102.4
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
54.6
HPA sample
nTPM
Classical monocyte nTPM: 53.9
Samples: 6
Max nTPM: 74.6
Min nTPM: 22.5
P10809_1003
74.6
P10809_1020
68.9
P10809_1039
60.4
P10809_1058
36.5
P10809_1080
22.5
P10809_1107
60.6
Intermediate monocyte nTPM: 45.4
Samples: 6
Max nTPM: 65.7
Min nTPM: 13.2
P10809_1004
65.7
P10809_1023
48.2
P10809_1042
48.5
P10809_1061
43.3
P10809_1081
13.2
P10809_1108
53.7
Non-classical monocyte nTPM: 54.6
Samples: 5
Max nTPM: 79.7
Min nTPM: 24.9
P10809_1005
70.1
P10809_1053
24.9
P10809_1072
79.7
P10809_1082
33.7
P10809_1109
64.5
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
342.7
Monaco sample
nTPM
Classical monocyte nTPM: 288.3
Samples: 4
Max nTPM: 368.4
Min nTPM: 236.1
RHH5313_R3680
278.9
RHH5221_R3593
368.4
RHH5250_R3622
270.0
RHH5279_R3651
236.1
Intermediate monocyte nTPM: 294.2
Samples: 4
Max nTPM: 452.7
Min nTPM: 200.6
RHH5314_R3681
253.7
RHH5222_R3594
452.7
RHH5251_R3623
269.7
RHH5280_R3652
200.6
Non-classical monocyte nTPM: 342.7
Samples: 4
Max nTPM: 476.7
Min nTPM: 221.8
RHH5315_R3682
320.6
RHH5223_R3595
476.7
RHH5252_R3624
351.7
RHH5281_R3653
221.8
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
102.4
Schmiedel sample id
TPM
Classical monocyte TPM: 87.6
Samples: 91
Max TPM: 112.7
Min TPM: 71.5
MONOCYTES_1
112.7
MONOCYTES_2
107.7
MONOCYTES_3
102.3
MONOCYTES_4
101.1
MONOCYTES_5
101.1
MONOCYTES_6
100.5
MONOCYTES_7
98.8
MONOCYTES_8
97.4
MONOCYTES_9
97.1
MONOCYTES_10
95.6
MONOCYTES_11
94.3
MONOCYTES_12
94.1
MONOCYTES_13
94.1
MONOCYTES_14
93.9
MONOCYTES_15
93.2
MONOCYTES_16
92.8
MONOCYTES_17
92.1
MONOCYTES_18
91.9
MONOCYTES_19
91.8
MONOCYTES_20
91.7
MONOCYTES_21
91.6
MONOCYTES_22
91.4
MONOCYTES_23
91.3
MONOCYTES_24
91.2
MONOCYTES_25
91.1
MONOCYTES_26
91.1
MONOCYTES_27
90.8
MONOCYTES_28
90.7
MONOCYTES_29
90.7
MONOCYTES_30
90.4
MONOCYTES_31
89.5
MONOCYTES_32
89.4
MONOCYTES_33
89.2
MONOCYTES_34
89.1
MONOCYTES_35
88.6
MONOCYTES_36
88.5
MONOCYTES_37
88.1
MONOCYTES_38
88.0
MONOCYTES_39
88.0
MONOCYTES_40
87.9
MONOCYTES_41
87.7
MONOCYTES_42
87.7
MONOCYTES_43
87.7
MONOCYTES_44
87.1
MONOCYTES_45
87.0
MONOCYTES_46
87.0
MONOCYTES_47
86.8
MONOCYTES_48
86.8
MONOCYTES_49
86.3
MONOCYTES_50
86.0
MONOCYTES_51
85.8
MONOCYTES_52
85.7
MONOCYTES_53
85.6
MONOCYTES_54
85.6
MONOCYTES_55
85.6
MONOCYTES_56
85.5
MONOCYTES_57
85.2
MONOCYTES_58
84.9
MONOCYTES_59
84.8
MONOCYTES_60
84.6
MONOCYTES_61
84.6
MONOCYTES_62
84.5
MONOCYTES_63
84.3
MONOCYTES_64
84.2
MONOCYTES_65
83.7
MONOCYTES_66
83.6
MONOCYTES_67
83.6
MONOCYTES_68
83.5
MONOCYTES_69
83.3
MONOCYTES_70
83.2
MONOCYTES_71
82.9
MONOCYTES_72
82.5
MONOCYTES_73
82.4
MONOCYTES_74
81.9
MONOCYTES_75
81.9
MONOCYTES_76
81.4
MONOCYTES_77
81.4
MONOCYTES_78
81.3
MONOCYTES_79
81.3
MONOCYTES_80
80.6
MONOCYTES_81
80.6
MONOCYTES_82
80.4
MONOCYTES_83
79.8
MONOCYTES_84
79.5
MONOCYTES_85
77.9
MONOCYTES_86
76.9
MONOCYTES_87
76.2
MONOCYTES_88
75.4
MONOCYTES_89
75.1
MONOCYTES_90
74.1
MONOCYTES_91
71.5
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Non-classical monocyte TPM: 102.4
Samples: 90
Max TPM: 122.4
Min TPM: 79.5
M2_1
122.4
M2_2
118.1
M2_3
116.1
M2_4
112.5
M2_5
112.2
M2_6
111.4
M2_7
110.4
M2_8
110.3
M2_9
110.2
M2_10
110.1
M2_11
109.8
M2_12
109.7
M2_13
109.4
M2_14
109.4
M2_15
108.9
M2_16
108.8
M2_17
108.0
M2_18
107.5
M2_19
107.1
M2_20
106.8
M2_21
106.6
M2_22
106.5
M2_23
106.1
M2_24
105.8
M2_25
105.6
M2_26
105.4
M2_27
105.2
M2_28
105.2
M2_29
104.9
M2_30
104.8
M2_31
104.7
M2_32
104.5
M2_33
104.4
M2_34
104.4
M2_35
104.3
M2_36
104.3
M2_37
103.7
M2_38
103.6
M2_39
103.5
M2_40
103.4
M2_41
103.3
M2_42
102.9
M2_43
102.8
M2_44
102.7
M2_45
102.7
M2_46
102.7
M2_47
102.4
M2_48
102.1
M2_49
101.9
M2_50
101.5
M2_51
101.2
M2_52
101.1
M2_53
101.0
M2_54
101.0
M2_55
100.9
M2_56
100.8
M2_57
100.6
M2_58
100.3
M2_59
100.3
M2_60
100.2
M2_61
99.9
M2_62
99.7
M2_63
99.6
M2_64
99.4
M2_65
99.3
M2_66
99.2
M2_67
99.1
M2_68
98.2
M2_69
98.2
M2_70
97.9
M2_71
97.7
M2_72
97.7
M2_73
97.6
M2_74
97.2
M2_75
96.9
M2_76
96.5
M2_77
96.4
M2_78
95.8
M2_79
95.1
M2_80
94.4
M2_81
94.2
M2_82
94.2
M2_83
93.9
M2_84
93.4
M2_85
93.2
M2_86
92.1
M2_87
91.0
M2_88
90.4
M2_89
88.9
M2_90
79.5
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