A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
54.4
nTPM
Monaco:
84.8
nTPM
Schmiedel:
22.9
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
54.4
HPA sample
nTPM
NK-cell nTPM: 54.4
Samples: 6
Max nTPM: 71.9
Min nTPM: 36.3
P10809_1013
37.6
P10809_1033
61.7
P10809_1052
55.5
P10809_1071
36.3
P10809_1093
71.9
P10809_1103
63.3
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
84.8
Monaco sample
nTPM
NK-cell nTPM: 84.9
Samples: 4
Max nTPM: 104.3
Min nTPM: 64.8
RHH5316_R3683
104.3
RHH5224_R3596
97.5
RHH5253_R3625
64.8
RHH5282_R3654
72.8
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
22.9
Schmiedel sample id
TPM
NK-cell TPM: 22.9
Samples: 90
Max TPM: 60.8
Min TPM: 3.7
NK_1
60.8
NK_2
52.6
NK_3
48.9
NK_4
48.8
NK_5
43.8
NK_6
43.7
NK_7
41.9
NK_8
39.5
NK_9
39.3
NK_10
39.3
NK_11
38.0
NK_12
37.5
NK_13
37.3
NK_14
37.3
NK_15
37.0
NK_16
36.6
NK_17
36.5
NK_18
33.1
NK_19
31.6
NK_20
31.5
NK_21
30.5
NK_22
30.2
NK_23
29.7
NK_24
29.5
NK_25
29.1
NK_26
29.1
NK_27
29.0
NK_28
28.8
NK_29
27.9
NK_30
27.9
NK_31
27.3
NK_32
27.0
NK_33
26.9
NK_34
26.6
NK_35
24.0
NK_36
24.0
NK_37
22.9
NK_38
22.8
NK_39
22.1
NK_40
22.0
NK_41
21.8
NK_42
21.6
NK_43
21.3
NK_44
21.1
NK_45
21.1
NK_46
20.6
NK_47
20.5
NK_48
20.4
NK_49
19.7
NK_50
19.3
NK_51
19.2
NK_52
19.1
NK_53
18.3
NK_54
18.1
NK_55
17.3
NK_56
17.3
NK_57
17.3
NK_58
17.1
NK_59
16.6
NK_60
16.6
NK_61
16.4
NK_62
16.2
NK_63
16.1
NK_64
16.0
NK_65
15.2
NK_66
14.1
NK_67
13.2
NK_68
13.0
NK_69
12.4
NK_70
12.3
NK_71
12.3
NK_72
12.3
NK_73
12.0
NK_74
11.9
NK_75
11.9
NK_76
11.7
NK_77
10.8
NK_78
10.8
NK_79
10.3
NK_80
9.4
NK_81
9.0
NK_82
8.8
NK_83
8.3
NK_84
6.9
NK_85
6.2
NK_86
6.0
NK_87
5.8
NK_88
4.7
NK_89
4.6
NK_90
3.7
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