A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
300.5
nTPM
Monaco:
481.8
nTPM
Schmiedel:
72.2
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
300.5
HPA sample
nTPM
Classical monocyte nTPM: 246.4
Samples: 6
Max nTPM: 323.4
Min nTPM: 172.5
P10809_1003
323.4
P10809_1020
269.2
P10809_1039
226.5
P10809_1058
172.5
P10809_1080
227.5
P10809_1107
259.6
Intermediate monocyte nTPM: 299.0
Samples: 6
Max nTPM: 342.5
Min nTPM: 218.3
P10809_1004
297.4
P10809_1023
327.7
P10809_1042
317.3
P10809_1061
290.7
P10809_1081
218.3
P10809_1108
342.5
Non-classical monocyte nTPM: 300.5
Samples: 5
Max nTPM: 403.7
Min nTPM: 192.0
P10809_1005
301.5
P10809_1053
267.8
P10809_1072
403.7
P10809_1082
192.0
P10809_1109
337.4
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
481.8
Monaco sample
nTPM
Classical monocyte nTPM: 422.5
Samples: 4
Max nTPM: 438.7
Min nTPM: 395.8
RHH5313_R3680
438.3
RHH5221_R3593
438.7
RHH5250_R3622
395.8
RHH5279_R3651
417.1
Intermediate monocyte nTPM: 481.8
Samples: 4
Max nTPM: 524.5
Min nTPM: 417.9
RHH5314_R3681
523.9
RHH5222_R3594
417.9
RHH5251_R3623
460.8
RHH5280_R3652
524.5
Non-classical monocyte nTPM: 481.1
Samples: 4
Max nTPM: 610.6
Min nTPM: 412.2
RHH5315_R3682
610.6
RHH5223_R3595
412.2
RHH5252_R3624
443.5
RHH5281_R3653
458.1
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
72.2
Schmiedel sample id
TPM
Classical monocyte TPM: 72.2
Samples: 91
Max TPM: 159.0
Min TPM: 24.8
MONOCYTES_1
159.0
MONOCYTES_2
145.6
MONOCYTES_3
144.0
MONOCYTES_4
134.8
MONOCYTES_5
129.4
MONOCYTES_6
128.4
MONOCYTES_7
127.7
MONOCYTES_8
123.4
MONOCYTES_9
123.2
MONOCYTES_10
121.1
MONOCYTES_11
117.1
MONOCYTES_12
115.3
MONOCYTES_13
114.3
MONOCYTES_14
114.2
MONOCYTES_15
111.9
MONOCYTES_16
110.2
MONOCYTES_17
109.6
MONOCYTES_18
105.8
MONOCYTES_19
102.0
MONOCYTES_20
100.5
MONOCYTES_21
99.5
MONOCYTES_22
97.0
MONOCYTES_23
95.3
MONOCYTES_24
94.7
MONOCYTES_25
94.2
MONOCYTES_26
93.3
MONOCYTES_27
91.6
MONOCYTES_28
91.5
MONOCYTES_29
87.4
MONOCYTES_30
86.6
MONOCYTES_31
86.5
MONOCYTES_32
84.8
MONOCYTES_33
84.1
MONOCYTES_34
82.1
MONOCYTES_35
81.1
MONOCYTES_36
80.8
MONOCYTES_37
80.5
MONOCYTES_38
76.6
MONOCYTES_39
75.9
MONOCYTES_40
73.7
MONOCYTES_41
72.0
MONOCYTES_42
71.5
MONOCYTES_43
69.7
MONOCYTES_44
66.1
MONOCYTES_45
65.9
MONOCYTES_46
65.2
MONOCYTES_47
64.3
MONOCYTES_48
63.3
MONOCYTES_49
63.2
MONOCYTES_50
62.3
MONOCYTES_51
60.6
MONOCYTES_52
59.4
MONOCYTES_53
58.0
MONOCYTES_54
56.5
MONOCYTES_55
56.0
MONOCYTES_56
55.2
MONOCYTES_57
54.0
MONOCYTES_58
53.9
MONOCYTES_59
53.8
MONOCYTES_60
51.2
MONOCYTES_61
51.1
MONOCYTES_62
50.3
MONOCYTES_63
48.6
MONOCYTES_64
48.6
MONOCYTES_65
48.3
MONOCYTES_66
47.6
MONOCYTES_67
47.5
MONOCYTES_68
47.5
MONOCYTES_69
46.3
MONOCYTES_70
45.9
MONOCYTES_71
44.6
MONOCYTES_72
42.2
MONOCYTES_73
41.1
MONOCYTES_74
39.9
MONOCYTES_75
39.2
MONOCYTES_76
35.5
MONOCYTES_77
34.8
MONOCYTES_78
34.7
MONOCYTES_79
34.6
MONOCYTES_80
32.8
MONOCYTES_81
31.3
MONOCYTES_82
31.2
MONOCYTES_83
31.1
MONOCYTES_84
30.0
MONOCYTES_85
29.8
MONOCYTES_86
29.4
MONOCYTES_87
28.6
MONOCYTES_88
27.8
MONOCYTES_89
27.1
MONOCYTES_90
25.3
MONOCYTES_91
24.8
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Non-classical monocyte TPM: 64.7
Samples: 90
Max TPM: 144.2
Min TPM: 13.1
M2_1
144.2
M2_2
136.7
M2_3
135.9
M2_4
131.5
M2_5
130.2
M2_6
128.4
M2_7
119.3
M2_8
117.9
M2_9
113.1
M2_10
110.1
M2_11
108.4
M2_12
107.9
M2_13
104.2
M2_14
102.3
M2_15
99.9
M2_16
99.9
M2_17
99.6
M2_18
97.3
M2_19
94.3
M2_20
91.5
M2_21
89.9
M2_22
88.1
M2_23
86.6
M2_24
83.9
M2_25
83.7
M2_26
83.5
M2_27
82.7
M2_28
82.0
M2_29
79.5
M2_30
76.9
M2_31
76.1
M2_32
75.7
M2_33
74.0
M2_34
73.7
M2_35
73.6
M2_36
73.3
M2_37
69.8
M2_38
67.7
M2_39
67.1
M2_40
66.6
M2_41
65.7
M2_42
65.3
M2_43
64.4
M2_44
64.1
M2_45
63.0
M2_46
59.0
M2_47
58.0
M2_48
57.9
M2_49
57.2
M2_50
56.7
M2_51
56.4
M2_52
55.1
M2_53
54.6
M2_54
54.3
M2_55
52.8
M2_56
51.4
M2_57
51.1
M2_58
49.4
M2_59
47.1
M2_60
46.6
M2_61
46.3
M2_62
44.4
M2_63
44.1
M2_64
40.5
M2_65
38.2
M2_66
37.9
M2_67
37.8
M2_68
36.5
M2_69
35.3
M2_70
35.1
M2_71
33.6
M2_72
31.2
M2_73
31.0
M2_74
29.7
M2_75
27.1
M2_76
27.1
M2_77
26.6
M2_78
26.4
M2_79
24.2
M2_80
23.7
M2_81
23.1
M2_82
22.7
M2_83
21.5
M2_84
20.6
M2_85
20.5
M2_86
19.7
M2_87
18.9
M2_88
14.6
M2_89
13.6
M2_90
13.1
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