A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
19.8
nTPM
Monaco:
108.4
nTPM
Schmiedel:
73.3
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
19.8
HPA sample
nTPM
Memory B-cell nTPM: 19.9
Samples: 6
Max nTPM: 31.7
Min nTPM: 14.5
P10809_1017
15.8
P10809_1025
20.6
P10809_1044
31.7
P10809_1063
14.5
P10809_1092
17.0
P10809_1105
19.5
Naive B-cell nTPM: 17.9
Samples: 6
Max nTPM: 28.9
Min nTPM: 10.8
P10809_1011
10.8
P10809_1029
16.3
P10809_1048
28.9
P10809_1067
13.8
P10809_1091
16.7
P10809_1104
20.7
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
108.4
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 46.3
Samples: 4
Max nTPM: 65.7
Min nTPM: 29.2
RHH5310_R3677
54.4
RHH5218_R3590
65.7
RHH5247_R3619
35.9
RHH5276_R3648
29.2
Naive B-cell nTPM: 52.7
Samples: 4
Max nTPM: 59.9
Min nTPM: 45.2
RHH5308_R3675
45.2
RHH5216_R3588
59.9
RHH5245_R3617
51.5
RHH5274_R3646
54.2
Non-switched memory B-cell nTPM: 44.9
Samples: 4
Max nTPM: 52.7
Min nTPM: 35.6
RHH5309_R3676
47.5
RHH5217_R3589
52.7
RHH5246_R3618
43.8
RHH5275_R3647
35.6
Plasmablast nTPM: 108.4
Samples: 4
Max nTPM: 151.2
Min nTPM: 84.5
RHH5312_R3679
105.0
RHH5220_R3592
151.2
RHH5249_R3621
84.5
RHH5278_R3650
92.8
Switched memory B-cell nTPM: 42.2
Samples: 4
Max nTPM: 54.6
Min nTPM: 29.5
RHH5311_R3678
29.5
RHH5219_R3591
54.6
RHH5248_R3620
47.5
RHH5277_R3649
37.1
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
73.3
Schmiedel sample id
TPM
Naive B-cell TPM: 73.3
Samples: 91
Max TPM: 109.0
Min TPM: 46.5
B_CELL_NAIVE_1
109.0
B_CELL_NAIVE_2
109.0
B_CELL_NAIVE_3
101.0
B_CELL_NAIVE_4
100.2
B_CELL_NAIVE_5
99.8
B_CELL_NAIVE_6
99.2
B_CELL_NAIVE_7
97.0
B_CELL_NAIVE_8
94.6
B_CELL_NAIVE_9
92.7
B_CELL_NAIVE_10
92.2
B_CELL_NAIVE_11
90.8
B_CELL_NAIVE_12
90.4
B_CELL_NAIVE_13
87.7
B_CELL_NAIVE_14
87.2
B_CELL_NAIVE_15
86.8
B_CELL_NAIVE_16
86.6
B_CELL_NAIVE_17
84.0
B_CELL_NAIVE_18
83.3
B_CELL_NAIVE_19
83.0
B_CELL_NAIVE_20
82.7
B_CELL_NAIVE_21
82.6
B_CELL_NAIVE_22
81.9
B_CELL_NAIVE_23
81.8
B_CELL_NAIVE_24
79.5
B_CELL_NAIVE_25
79.1
B_CELL_NAIVE_26
78.6
B_CELL_NAIVE_27
78.5
B_CELL_NAIVE_28
78.2
B_CELL_NAIVE_29
77.6
B_CELL_NAIVE_30
77.1
B_CELL_NAIVE_31
77.1
B_CELL_NAIVE_32
76.9
B_CELL_NAIVE_33
76.9
B_CELL_NAIVE_34
76.8
B_CELL_NAIVE_35
76.5
B_CELL_NAIVE_36
76.4
B_CELL_NAIVE_37
75.9
B_CELL_NAIVE_38
75.4
B_CELL_NAIVE_39
74.2
B_CELL_NAIVE_40
73.8
B_CELL_NAIVE_41
73.6
B_CELL_NAIVE_42
73.5
B_CELL_NAIVE_43
73.4
B_CELL_NAIVE_44
72.6
B_CELL_NAIVE_45
72.5
B_CELL_NAIVE_46
72.3
B_CELL_NAIVE_47
71.1
B_CELL_NAIVE_48
71.1
B_CELL_NAIVE_49
71.0
B_CELL_NAIVE_50
70.7
B_CELL_NAIVE_51
70.3
B_CELL_NAIVE_52
70.1
B_CELL_NAIVE_53
70.1
B_CELL_NAIVE_54
69.9
B_CELL_NAIVE_55
69.9
B_CELL_NAIVE_56
69.5
B_CELL_NAIVE_57
69.4
B_CELL_NAIVE_58
69.4
B_CELL_NAIVE_59
69.3
B_CELL_NAIVE_60
68.9
B_CELL_NAIVE_61
68.1
B_CELL_NAIVE_62
67.8
B_CELL_NAIVE_63
67.2
B_CELL_NAIVE_64
67.1
B_CELL_NAIVE_65
66.6
B_CELL_NAIVE_66
66.5
B_CELL_NAIVE_67
63.7
B_CELL_NAIVE_68
63.6
B_CELL_NAIVE_69
63.3
B_CELL_NAIVE_70
63.2
B_CELL_NAIVE_71
62.9
B_CELL_NAIVE_72
61.7
B_CELL_NAIVE_73
61.1
B_CELL_NAIVE_74
61.1
B_CELL_NAIVE_75
60.9
B_CELL_NAIVE_76
59.2
B_CELL_NAIVE_77
58.9
B_CELL_NAIVE_78
58.7
B_CELL_NAIVE_79
58.3
B_CELL_NAIVE_80
57.2
B_CELL_NAIVE_81
56.6
B_CELL_NAIVE_82
56.5
B_CELL_NAIVE_83
56.2
B_CELL_NAIVE_84
54.4
B_CELL_NAIVE_85
54.0
B_CELL_NAIVE_86
53.2
B_CELL_NAIVE_87
52.5
B_CELL_NAIVE_88
52.3
B_CELL_NAIVE_89
52.1
B_CELL_NAIVE_90
51.0
B_CELL_NAIVE_91
46.5
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The Human Protein Atlas project is funded
