A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
42.8
nTPM
Monaco:
88.2
nTPM
Schmiedel:
121.8
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
42.8
HPA sample
nTPM
Classical monocyte nTPM: 32.4
Samples: 6
Max nTPM: 40.8
Min nTPM: 23.1
P10809_1003
29.5
P10809_1020
38.6
P10809_1039
40.8
P10809_1058
23.1
P10809_1080
32.0
P10809_1107
30.3
Intermediate monocyte nTPM: 32.7
Samples: 6
Max nTPM: 38.9
Min nTPM: 28.9
P10809_1004
28.9
P10809_1023
38.9
P10809_1042
32.2
P10809_1061
31.5
P10809_1081
30.0
P10809_1108
34.6
Non-classical monocyte nTPM: 42.8
Samples: 5
Max nTPM: 68.4
Min nTPM: 26.9
P10809_1005
33.3
P10809_1053
44.2
P10809_1072
68.4
P10809_1082
26.9
P10809_1109
41.1
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
88.2
Monaco sample
nTPM
Classical monocyte nTPM: 88.2
Samples: 4
Max nTPM: 96.0
Min nTPM: 72.4
RHH5313_R3680
72.4
RHH5221_R3593
96.0
RHH5250_R3622
90.4
RHH5279_R3651
93.9
Intermediate monocyte nTPM: 76.8
Samples: 4
Max nTPM: 83.5
Min nTPM: 71.0
RHH5314_R3681
79.1
RHH5222_R3594
73.7
RHH5251_R3623
71.0
RHH5280_R3652
83.5
Non-classical monocyte nTPM: 79.8
Samples: 4
Max nTPM: 95.4
Min nTPM: 72.5
RHH5315_R3682
72.5
RHH5223_R3595
74.4
RHH5252_R3624
76.8
RHH5281_R3653
95.4
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
121.8
Schmiedel sample id
TPM
Classical monocyte TPM: 100.9
Samples: 91
Max TPM: 131.1
Min TPM: 79.8
MONOCYTES_1
131.1
MONOCYTES_2
130.0
MONOCYTES_3
120.4
MONOCYTES_4
119.5
MONOCYTES_5
118.1
MONOCYTES_6
117.9
MONOCYTES_7
117.1
MONOCYTES_8
116.1
MONOCYTES_9
115.5
MONOCYTES_10
115.4
MONOCYTES_11
114.5
MONOCYTES_12
114.4
MONOCYTES_13
114.2
MONOCYTES_14
113.4
MONOCYTES_15
113.3
MONOCYTES_16
112.5
MONOCYTES_17
111.7
MONOCYTES_18
111.4
MONOCYTES_19
111.0
MONOCYTES_20
110.9
MONOCYTES_21
110.5
MONOCYTES_22
110.5
MONOCYTES_23
109.4
MONOCYTES_24
108.8
MONOCYTES_25
108.4
MONOCYTES_26
108.1
MONOCYTES_27
108.1
MONOCYTES_28
107.3
MONOCYTES_29
106.8
MONOCYTES_30
106.5
MONOCYTES_31
105.1
MONOCYTES_32
103.1
MONOCYTES_33
102.8
MONOCYTES_34
102.8
MONOCYTES_35
102.2
MONOCYTES_36
102.0
MONOCYTES_37
101.8
MONOCYTES_38
101.0
MONOCYTES_39
100.9
MONOCYTES_40
100.6
MONOCYTES_41
100.5
MONOCYTES_42
100.5
MONOCYTES_43
100.2
MONOCYTES_44
100.1
MONOCYTES_45
100.0
MONOCYTES_46
99.8
MONOCYTES_47
99.5
MONOCYTES_48
99.3
MONOCYTES_49
99.2
MONOCYTES_50
98.9
MONOCYTES_51
98.8
MONOCYTES_52
98.4
MONOCYTES_53
98.1
MONOCYTES_54
97.7
MONOCYTES_55
97.7
MONOCYTES_56
97.6
MONOCYTES_57
96.5
MONOCYTES_58
95.4
MONOCYTES_59
95.1
MONOCYTES_60
94.9
MONOCYTES_61
94.7
MONOCYTES_62
94.6
MONOCYTES_63
94.5
MONOCYTES_64
94.4
MONOCYTES_65
94.4
MONOCYTES_66
93.2
MONOCYTES_67
92.8
MONOCYTES_68
92.6
MONOCYTES_69
91.9
MONOCYTES_70
91.6
MONOCYTES_71
91.3
MONOCYTES_72
91.1
MONOCYTES_73
90.3
MONOCYTES_74
90.2
MONOCYTES_75
89.8
MONOCYTES_76
88.8
MONOCYTES_77
88.7
MONOCYTES_78
88.6
MONOCYTES_79
88.2
MONOCYTES_80
88.1
MONOCYTES_81
87.9
MONOCYTES_82
87.5
MONOCYTES_83
87.4
MONOCYTES_84
87.4
MONOCYTES_85
86.9
MONOCYTES_86
86.8
MONOCYTES_87
86.8
MONOCYTES_88
86.6
MONOCYTES_89
85.7
MONOCYTES_90
84.4
MONOCYTES_91
79.8
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Non-classical monocyte TPM: 121.8
Samples: 90
Max TPM: 166.2
Min TPM: 85.8
M2_1
166.2
M2_2
164.5
M2_3
161.7
M2_4
154.4
M2_5
153.9
M2_6
153.1
M2_7
151.9
M2_8
151.3
M2_9
147.2
M2_10
146.5
M2_11
146.2
M2_12
146.1
M2_13
142.1
M2_14
141.6
M2_15
139.9
M2_16
138.8
M2_17
138.3
M2_18
137.5
M2_19
136.9
M2_20
136.4
M2_21
135.3
M2_22
135.0
M2_23
131.4
M2_24
129.4
M2_25
129.0
M2_26
128.4
M2_27
128.1
M2_28
126.0
M2_29
125.8
M2_30
125.7
M2_31
125.1
M2_32
124.1
M2_33
123.8
M2_34
122.5
M2_35
121.8
M2_36
121.2
M2_37
121.1
M2_38
120.5
M2_39
120.1
M2_40
119.4
M2_41
119.0
M2_42
118.3
M2_43
118.2
M2_44
118.1
M2_45
117.8
M2_46
117.1
M2_47
117.1
M2_48
116.9
M2_49
116.8
M2_50
116.3
M2_51
116.1
M2_52
116.1
M2_53
115.8
M2_54
115.7
M2_55
115.4
M2_56
114.9
M2_57
114.9
M2_58
114.6
M2_59
114.5
M2_60
114.5
M2_61
114.1
M2_62
113.8
M2_63
113.4
M2_64
113.0
M2_65
112.2
M2_66
111.1
M2_67
110.7
M2_68
110.6
M2_69
110.2
M2_70
109.8
M2_71
108.6
M2_72
108.4
M2_73
107.4
M2_74
107.3
M2_75
107.0
M2_76
106.8
M2_77
106.5
M2_78
104.6
M2_79
103.3
M2_80
103.0
M2_81
102.7
M2_82
102.6
M2_83
102.2
M2_84
101.2
M2_85
99.7
M2_86
99.2
M2_87
99.1
M2_88
96.5
M2_89
95.2
M2_90
85.8
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