A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
68.1
nTPM
Monaco:
171.3
nTPM
Schmiedel:
338.0
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
68.1
HPA sample
nTPM
NK-cell nTPM: 68.1
Samples: 6
Max nTPM: 97.9
Min nTPM: 42.2
P10809_1013
62.9
P10809_1033
97.9
P10809_1052
42.2
P10809_1071
73.4
P10809_1093
46.5
P10809_1103
85.7
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
171.3
Monaco sample
nTPM
NK-cell nTPM: 171.3
Samples: 4
Max nTPM: 237.6
Min nTPM: 126.4
RHH5316_R3683
237.6
RHH5224_R3596
126.4
RHH5253_R3625
144.0
RHH5282_R3654
177.2
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
338.0
Schmiedel sample id
TPM
NK-cell TPM: 338.0
Samples: 90
Max TPM: 496.1
Min TPM: 158.7
NK_1
496.1
NK_2
488.1
NK_3
487.4
NK_4
473.5
NK_5
473.1
NK_6
471.0
NK_7
468.6
NK_8
465.1
NK_9
462.8
NK_10
458.6
NK_11
448.3
NK_12
447.2
NK_13
447.2
NK_14
439.3
NK_15
434.2
NK_16
434.1
NK_17
424.5
NK_18
418.3
NK_19
412.9
NK_20
407.2
NK_21
406.2
NK_22
399.6
NK_23
397.6
NK_24
395.5
NK_25
395.3
NK_26
392.0
NK_27
386.7
NK_28
386.3
NK_29
385.4
NK_30
383.6
NK_31
382.0
NK_32
380.9
NK_33
380.2
NK_34
375.9
NK_35
371.9
NK_36
369.4
NK_37
369.3
NK_38
367.0
NK_39
364.2
NK_40
361.6
NK_41
361.2
NK_42
355.5
NK_43
353.1
NK_44
352.6
NK_45
348.0
NK_46
338.1
NK_47
335.6
NK_48
335.6
NK_49
332.8
NK_50
331.7
NK_51
328.4
NK_52
327.0
NK_53
321.3
NK_54
312.0
NK_55
310.5
NK_56
307.7
NK_57
306.8
NK_58
305.2
NK_59
302.6
NK_60
298.8
NK_61
298.4
NK_62
296.7
NK_63
296.4
NK_64
296.3
NK_65
291.5
NK_66
280.0
NK_67
278.5
NK_68
275.6
NK_69
275.0
NK_70
266.1
NK_71
260.6
NK_72
259.7
NK_73
251.6
NK_74
251.6
NK_75
245.9
NK_76
239.9
NK_77
230.1
NK_78
229.4
NK_79
227.8
NK_80
223.4
NK_81
211.3
NK_82
208.6
NK_83
203.3
NK_84
200.1
NK_85
185.7
NK_86
184.8
NK_87
181.9
NK_88
179.9
NK_89
158.7
NK_90
158.7
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