A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
36.6
nTPM
Monaco:
128.4
nTPM
Schmiedel:
128.7
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
36.6
HPA sample
nTPM
Classical monocyte nTPM: 36.6
Samples: 6
Max nTPM: 70.9
Min nTPM: 12.9
P10809_1003
70.9
P10809_1020
43.2
P10809_1039
27.6
P10809_1058
17.6
P10809_1080
12.9
P10809_1107
47.1
Intermediate monocyte nTPM: 27.2
Samples: 6
Max nTPM: 52.5
Min nTPM: 4.7
P10809_1004
52.5
P10809_1023
43.6
P10809_1042
18.5
P10809_1061
11.3
P10809_1081
4.7
P10809_1108
32.5
Non-classical monocyte nTPM: 25.4
Samples: 5
Max nTPM: 45.6
Min nTPM: 7.1
P10809_1005
45.6
P10809_1053
7.1
P10809_1072
34.8
P10809_1082
12.5
P10809_1109
26.8
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
128.4
Monaco sample
nTPM
Classical monocyte nTPM: 128.4
Samples: 4
Max nTPM: 155.1
Min nTPM: 89.2
RHH5313_R3680
126.5
RHH5221_R3593
142.7
RHH5250_R3622
89.2
RHH5279_R3651
155.1
Intermediate monocyte nTPM: 101.1
Samples: 4
Max nTPM: 131.6
Min nTPM: 63.1
RHH5314_R3681
131.6
RHH5222_R3594
102.2
RHH5251_R3623
107.5
RHH5280_R3652
63.1
Non-classical monocyte nTPM: 84.8
Samples: 4
Max nTPM: 104.9
Min nTPM: 46.4
RHH5315_R3682
104.9
RHH5223_R3595
85.8
RHH5252_R3624
102.1
RHH5281_R3653
46.4
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
128.7
Schmiedel sample id
TPM
Classical monocyte TPM: 128.7
Samples: 91
Max TPM: 194.3
Min TPM: 65.2
MONOCYTES_1
194.3
MONOCYTES_2
184.7
MONOCYTES_3
184.1
MONOCYTES_4
182.4
MONOCYTES_5
180.2
MONOCYTES_6
173.5
MONOCYTES_7
167.8
MONOCYTES_8
164.2
MONOCYTES_9
164.0
MONOCYTES_10
162.2
MONOCYTES_11
162.1
MONOCYTES_12
161.5
MONOCYTES_13
161.4
MONOCYTES_14
157.6
MONOCYTES_15
156.9
MONOCYTES_16
156.8
MONOCYTES_17
155.6
MONOCYTES_18
155.2
MONOCYTES_19
155.1
MONOCYTES_20
154.8
MONOCYTES_21
154.4
MONOCYTES_22
154.1
MONOCYTES_23
150.6
MONOCYTES_24
150.0
MONOCYTES_25
149.6
MONOCYTES_26
148.5
MONOCYTES_27
146.8
MONOCYTES_28
144.8
MONOCYTES_29
144.6
MONOCYTES_30
143.7
MONOCYTES_31
143.0
MONOCYTES_32
142.8
MONOCYTES_33
142.4
MONOCYTES_34
140.4
MONOCYTES_35
140.1
MONOCYTES_36
139.5
MONOCYTES_37
139.4
MONOCYTES_38
138.5
MONOCYTES_39
137.9
MONOCYTES_40
137.5
MONOCYTES_41
137.1
MONOCYTES_42
136.0
MONOCYTES_43
136.0
MONOCYTES_44
131.8
MONOCYTES_45
131.4
MONOCYTES_46
130.8
MONOCYTES_47
129.4
MONOCYTES_48
127.9
MONOCYTES_49
127.6
MONOCYTES_50
127.2
MONOCYTES_51
126.3
MONOCYTES_52
126.2
MONOCYTES_53
125.8
MONOCYTES_54
121.1
MONOCYTES_55
119.6
MONOCYTES_56
118.9
MONOCYTES_57
117.0
MONOCYTES_58
113.9
MONOCYTES_59
113.7
MONOCYTES_60
112.0
MONOCYTES_61
111.4
MONOCYTES_62
110.2
MONOCYTES_63
110.0
MONOCYTES_64
109.9
MONOCYTES_65
109.4
MONOCYTES_66
107.0
MONOCYTES_67
106.6
MONOCYTES_68
106.6
MONOCYTES_69
105.7
MONOCYTES_70
105.3
MONOCYTES_71
103.9
MONOCYTES_72
103.9
MONOCYTES_73
103.8
MONOCYTES_74
101.8
MONOCYTES_75
101.3
MONOCYTES_76
101.1
MONOCYTES_77
99.7
MONOCYTES_78
98.6
MONOCYTES_79
95.8
MONOCYTES_80
94.7
MONOCYTES_81
90.9
MONOCYTES_82
88.5
MONOCYTES_83
88.1
MONOCYTES_84
85.4
MONOCYTES_85
85.2
MONOCYTES_86
84.1
MONOCYTES_87
78.4
MONOCYTES_88
78.3
MONOCYTES_89
74.9
MONOCYTES_90
72.5
MONOCYTES_91
65.2
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Non-classical monocyte TPM: 85.5
Samples: 90
Max TPM: 152.3
Min TPM: 27.8
M2_1
152.3
M2_2
147.4
M2_3
137.8
M2_4
135.9
M2_5
133.9
M2_6
128.8
M2_7
128.8
M2_8
123.8
M2_9
123.5
M2_10
122.6
M2_11
118.0
M2_12
115.1
M2_13
113.1
M2_14
112.9
M2_15
112.9
M2_16
112.5
M2_17
109.0
M2_18
107.9
M2_19
107.7
M2_20
106.0
M2_21
104.4
M2_22
103.7
M2_23
103.7
M2_24
102.9
M2_25
102.5
M2_26
101.8
M2_27
99.9
M2_28
98.5
M2_29
98.3
M2_30
97.9
M2_31
97.0
M2_32
97.0
M2_33
96.9
M2_34
96.7
M2_35
94.9
M2_36
93.7
M2_37
93.2
M2_38
92.9
M2_39
92.4
M2_40
91.5
M2_41
90.9
M2_42
88.8
M2_43
88.7
M2_44
85.1
M2_45
84.8
M2_46
84.6
M2_47
84.4
M2_48
84.4
M2_49
84.2
M2_50
83.5
M2_51
81.8
M2_52
81.4
M2_53
81.2
M2_54
79.4
M2_55
79.0
M2_56
78.5
M2_57
77.5
M2_58
77.4
M2_59
77.2
M2_60
74.7
M2_61
74.6
M2_62
72.1
M2_63
70.7
M2_64
69.8
M2_65
68.1
M2_66
67.3
M2_67
66.6
M2_68
64.4
M2_69
63.1
M2_70
62.9
M2_71
62.8
M2_72
62.3
M2_73
60.5
M2_74
57.8
M2_75
55.4
M2_76
54.9
M2_77
54.3
M2_78
52.4
M2_79
51.0
M2_80
50.6
M2_81
48.6
M2_82
47.3
M2_83
45.2
M2_84
44.3
M2_85
41.6
M2_86
39.6
M2_87
37.6
M2_88
33.1
M2_89
32.5
M2_90
27.8
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