HIPPOCAMPAL FORMATION - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:31.6 nTPM
HPA Brain:19.8 nTPM
GTEx:31.6 nTPM
FANTOM5:31.6 Scaled Tags Per Million
Pig:38.1 nTPM
Mouse:54.0 nTPM
Allen mouse:3.1 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

HIPPOCAMPAL FORMATION - Annotated protein expression
Pending normal tissue analysis

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi 19.8
Sample id Sample description nTPM
Hippocampus
nTPM: 19.8
2621 Female, age 67, right hemisphere 22.1
1898 Male, age 80, left hemisphere 21.7
2148 Female, age 91, left hemisphere 21.4
2529 Female, age 94, left hemisphere 20.1
1911 Female, age 85, right hemisphere 18.2
1855 Male, age 76, left hemisphere 15.2
Dentate gyrus
nTPM: 16.2
1927 Female, age 91, both hemispheres 19.3
2010 Male, age 76, both hemispheres 19.0
2531 Female, age 67, both hemispheres 16.4
2530 Female, age 94, left hemisphere 15.5
2246 Female, age 85, both hemispheres 13.6
2528 Male, age 74, both hemispheres 13.4
Entorhinal gyrus
nTPM: 18.1
1787 Male, age 76, left hemisphere 19.9
2764 Male, age 80, right hemisphere 19.5
2686 Male, age 75, right hemisphere 18.7
2613 Female, age 94, left hemisphere 17.7
2117 Female, age 91, right hemisphere 16.8
1938 Female, age 85, left hemisphere 16.2
Hippocampus, CA1
nTPM: 18.0
2749 Male, age 80, left hemisphere 26.8
2045 Male, age 76, both hemispheres 17.1
1873 Female, age 85, both hemispheres 16.3
2527 Male, age 74, both hemispheres 15.6
2082 Female, age 91, right hemisphere 14.1
Hippocampus, CA2
nTPM: 18.8
1940 Female, age 85, left hemisphere 24.3
1892 Male, age 76, both hemispheres 21.4
2437 Female, age 94, left hemisphere 18.3
1963 Male, age 80, left hemisphere 18.2
2113 Female, age 91, right hemisphere 17.2
2249 Male, age 74, both hemispheres 13.4
Hippocampus, CA3
nTPM: 18.7
2137 Male, age 80, left hemisphere 25.9
1867 Male, age 76, both hemispheres 25.7
2861 Female, age 67, both hemispheres 20.6
1891 Female, age 85, both hemispheres 15.3
2620 Female, age 94, left hemisphere 14.3
2436 Male, age 74, both hemispheres 10.4
Parahippocampal cortex
nTPM: 19.2
2622 Female, age 67, right hemisphere 25.6
2245 Female, age 91, both hemispheres 22.9
2250 Female, age 67, right hemisphere 20.7
2018 Male, age 76, both hemispheres 20.5
1990 Female, age 91, right hemisphere 18.3
2532 Female, age 72, left hemisphere 17.9
1933 Female, age 85, both hemispheres 17.6
1850 Male, age 80, both hemispheres 16.7
2693 Female, age 94, both hemispheres 16.5
2692 Male, age 74, both hemispheres 15.3
Perirhinal gyrus
nTPM: 18.2
2521 Female, age 94, right hemisphere 20.3
1847 Female, age 91, left hemisphere 18.1
1794 Male, age 80, right hemisphere 17.7
1841 Female, age 85, right hemisphere 17.3
2848 Male, age 76, right hemisphere 17.3
Subiculum
nTPM: 19.6
1901 Male, age 80, both hemispheres 21.3
2619 Male, age 74, both hemispheres 21.3
2438 Female, age 94, left hemisphere 21.1
2042 Male, age 76, both hemispheres 18.9
2729 Female, age 91, right hemisphere 18.5
1977 Female, age 85, both hemispheres 16.6

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Max subtype nTPMi 31.6
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 31.6
Samples: 255

Max nTPM: 75.8
Min nTPM: 10.3
Std nTPM: 11.9
Median nTPM: 29.4
GTEX-13PDP-0011-R1a-SM-5PNX5 60-69 years, male 75.8
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 72.3
GTEX-1F52S-0011-R1a-SM-9OSX9 60-69 years, female 71.4
GTEX-ZF28-0011-R1a-SM-4WWD1 60-69 years, male 61.0
GTEX-1LKK1-0011-R1b-SM-F2TAF 50-59 years, female 60.2
GTEX-OHPN-0011-R1A-SM-2I5GB 60-69 years, female 59.3
GTEX-14PN4-0011-R1b-SM-69LP8 50-59 years, male 58.9
GTEX-12126-0011-R1a-SM-GJ3Q8 20-29 years, male 57.0
GTEX-1JJEA-0011-R1b-SM-F6495 60-69 years, male 56.7
GTEX-1I19N-0011-R1b-SM-GOR1A 70-79 years, male 56.0
GTEX-13FTY-0011-R1a-SM-5LZXE 40-49 years, female 55.5
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 31.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 31.6
FF:10153-102I9 76 years, female 33.2
FF:10169-103B7 60 years, female 30.1

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Max subtype nTPMi 38.1
Pig sample Sample description nTPM
Subiculum
nTPM: 31.5
Samples: 4

Max nTPM: 42.6
Min nTPM: 27.5
Sample A Female 42.6
Sample B Female 27.5
Sample C Male 27.5
Sample D Male 28.2
Dorsal hippocampus
nTPM: 32.4
Samples: 4

Max nTPM: 41.8
Min nTPM: 26.8
Sample A Female 33.7
Sample B Female 26.8
Sample C Male 41.8
Sample D Male 27.1
Entorhinal cortex
nTPM: 38.2
Samples: 4

Max nTPM: 45.7
Min nTPM: 30.6
Sample A Female 38.2
Sample B Female 45.7
Sample C Male 38.1
Sample D Male 30.6
Ventral hippocampus
nTPM: 27.0
Samples: 4

Max nTPM: 32.4
Min nTPM: 21.7
Sample A Female 21.7
Sample B Female 24.2
Sample C Male 32.4
Sample D Male 29.6

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Max subtype nTPMi 54.0
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 54.0
Samples: 4

Max nTPM: 68.4
Min nTPM: 41.3
Sample A Male 61.6
Sample B Male 68.4
Sample C Female 44.8
Sample D Female 41.3
Hippocampal formation
nTPM: 33.0
Samples: 4

Max nTPM: 37.3
Min nTPM: 30.5
Sample A Male 33.0
Sample B Male 31.0
Sample C Female 30.5
Sample D Female 37.3

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max subtype Expression energyi 3.1
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 3.1
69407248 Antisense, RP_050414_01_C01, Mouse strain C57BL/6J (56 days, male) 3.1

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