A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
20.1
nTPM
Monaco:
15.7
nTPM
Schmiedel:
52.4
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
20.1
HPA sample
nTPM
Memory B-cell nTPM: 20.1
Samples: 6
Max nTPM: 44.1
Min nTPM: 12.8
P10809_1017
12.8
P10809_1025
15.0
P10809_1044
44.1
P10809_1063
16.0
P10809_1092
19.2
P10809_1105
13.3
Naive B-cell nTPM: 17.2
Samples: 6
Max nTPM: 21.4
Min nTPM: 14.5
P10809_1011
16.7
P10809_1029
15.4
P10809_1048
19.2
P10809_1067
21.4
P10809_1091
16.2
P10809_1104
14.5
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
15.7
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 12.7
Samples: 4
Max nTPM: 17.9
Min nTPM: 7.8
RHH5310_R3677
7.8
RHH5218_R3590
17.9
RHH5247_R3619
11.7
RHH5276_R3648
13.4
Naive B-cell nTPM: 15.6
Samples: 4
Max nTPM: 21.6
Min nTPM: 8.9
RHH5308_R3675
19.1
RHH5216_R3588
12.9
RHH5245_R3617
8.9
RHH5274_R3646
21.6
Non-switched memory B-cell nTPM: 15.7
Samples: 4
Max nTPM: 18.4
Min nTPM: 12.1
RHH5309_R3676
12.1
RHH5217_R3589
14.6
RHH5246_R3618
17.6
RHH5275_R3647
18.4
Plasmablast nTPM: 4.5
Samples: 4
Max nTPM: 10.8
Min nTPM: 2.2
RHH5312_R3679
2.2
RHH5220_R3592
2.9
RHH5249_R3621
10.8
RHH5278_R3650
2.2
Switched memory B-cell nTPM: 12.0
Samples: 4
Max nTPM: 18.3
Min nTPM: 3.1
RHH5311_R3678
9.6
RHH5219_R3591
16.8
RHH5248_R3620
3.1
RHH5277_R3649
18.3
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
52.4
Schmiedel sample id
TPM
Naive B-cell TPM: 52.4
Samples: 91
Max TPM: 92.5
Min TPM: 28.3
B_CELL_NAIVE_1
92.5
B_CELL_NAIVE_2
83.2
B_CELL_NAIVE_3
75.3
B_CELL_NAIVE_4
73.3
B_CELL_NAIVE_5
71.7
B_CELL_NAIVE_6
69.6
B_CELL_NAIVE_7
68.4
B_CELL_NAIVE_8
67.5
B_CELL_NAIVE_9
64.8
B_CELL_NAIVE_10
64.4
B_CELL_NAIVE_11
63.2
B_CELL_NAIVE_12
63.1
B_CELL_NAIVE_13
61.8
B_CELL_NAIVE_14
61.8
B_CELL_NAIVE_15
61.3
B_CELL_NAIVE_16
60.8
B_CELL_NAIVE_17
60.6
B_CELL_NAIVE_18
60.1
B_CELL_NAIVE_19
59.7
B_CELL_NAIVE_20
59.0
B_CELL_NAIVE_21
58.9
B_CELL_NAIVE_22
58.7
B_CELL_NAIVE_23
58.7
B_CELL_NAIVE_24
58.7
B_CELL_NAIVE_25
58.5
B_CELL_NAIVE_26
57.5
B_CELL_NAIVE_27
57.4
B_CELL_NAIVE_28
57.4
B_CELL_NAIVE_29
57.1
B_CELL_NAIVE_30
56.9
B_CELL_NAIVE_31
56.9
B_CELL_NAIVE_32
56.4
B_CELL_NAIVE_33
55.9
B_CELL_NAIVE_34
55.4
B_CELL_NAIVE_35
55.3
B_CELL_NAIVE_36
55.1
B_CELL_NAIVE_37
55.0
B_CELL_NAIVE_38
54.1
B_CELL_NAIVE_39
53.9
B_CELL_NAIVE_40
53.8
B_CELL_NAIVE_41
53.8
B_CELL_NAIVE_42
53.6
B_CELL_NAIVE_43
53.5
B_CELL_NAIVE_44
53.5
B_CELL_NAIVE_45
53.4
B_CELL_NAIVE_46
52.8
B_CELL_NAIVE_47
52.8
B_CELL_NAIVE_48
52.7
B_CELL_NAIVE_49
52.4
B_CELL_NAIVE_50
52.0
B_CELL_NAIVE_51
51.7
B_CELL_NAIVE_52
51.5
B_CELL_NAIVE_53
50.5
B_CELL_NAIVE_54
50.0
B_CELL_NAIVE_55
48.8
B_CELL_NAIVE_56
48.8
B_CELL_NAIVE_57
48.5
B_CELL_NAIVE_58
48.2
B_CELL_NAIVE_59
48.2
B_CELL_NAIVE_60
48.1
B_CELL_NAIVE_61
47.7
B_CELL_NAIVE_62
47.3
B_CELL_NAIVE_63
46.5
B_CELL_NAIVE_64
46.4
B_CELL_NAIVE_65
46.4
B_CELL_NAIVE_66
45.9
B_CELL_NAIVE_67
45.8
B_CELL_NAIVE_68
45.7
B_CELL_NAIVE_69
45.0
B_CELL_NAIVE_70
44.7
B_CELL_NAIVE_71
44.5
B_CELL_NAIVE_72
44.3
B_CELL_NAIVE_73
43.9
B_CELL_NAIVE_74
43.5
B_CELL_NAIVE_75
43.4
B_CELL_NAIVE_76
42.5
B_CELL_NAIVE_77
42.4
B_CELL_NAIVE_78
41.4
B_CELL_NAIVE_79
41.3
B_CELL_NAIVE_80
41.2
B_CELL_NAIVE_81
40.4
B_CELL_NAIVE_82
40.3
B_CELL_NAIVE_83
40.1
B_CELL_NAIVE_84
35.6
B_CELL_NAIVE_85
35.6
B_CELL_NAIVE_86
35.1
B_CELL_NAIVE_87
33.6
B_CELL_NAIVE_88
30.2
B_CELL_NAIVE_89
30.0
B_CELL_NAIVE_90
29.4
B_CELL_NAIVE_91
28.3
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