A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
25.9
nTPM
Monaco:
28.0
nTPM
Schmiedel:
105.9
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
25.9
HPA sample
nTPM
Classical monocyte nTPM: 25.9
Samples: 6
Max nTPM: 37.2
Min nTPM: 11.1
P10809_1003
11.1
P10809_1020
24.9
P10809_1039
37.2
P10809_1058
25.1
P10809_1080
24.9
P10809_1107
32.4
Intermediate monocyte nTPM: 24.8
Samples: 6
Max nTPM: 34.9
Min nTPM: 17.2
P10809_1004
18.5
P10809_1023
23.4
P10809_1042
26.2
P10809_1061
17.2
P10809_1081
28.4
P10809_1108
34.9
Non-classical monocyte nTPM: 23.5
Samples: 5
Max nTPM: 32.6
Min nTPM: 14.6
P10809_1005
17.9
P10809_1053
14.6
P10809_1072
21.9
P10809_1082
32.6
P10809_1109
30.4
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
28.0
Monaco sample
nTPM
Classical monocyte nTPM: 20.9
Samples: 4
Max nTPM: 28.6
Min nTPM: 12.5
RHH5313_R3680
17.0
RHH5221_R3593
28.6
RHH5250_R3622
12.5
RHH5279_R3651
25.3
Intermediate monocyte nTPM: 28.0
Samples: 4
Max nTPM: 32.7
Min nTPM: 23.3
RHH5314_R3681
28.6
RHH5222_R3594
23.3
RHH5251_R3623
32.7
RHH5280_R3652
27.3
Non-classical monocyte nTPM: 20.4
Samples: 4
Max nTPM: 27.6
Min nTPM: 9.4
RHH5315_R3682
26.0
RHH5223_R3595
9.4
RHH5252_R3624
27.6
RHH5281_R3653
18.4
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
105.9
Schmiedel sample id
TPM
Classical monocyte TPM: 105.9
Samples: 91
Max TPM: 146.3
Min TPM: 67.9
MONOCYTES_1
146.3
MONOCYTES_2
144.4
MONOCYTES_3
139.2
MONOCYTES_4
134.0
MONOCYTES_5
133.1
MONOCYTES_6
132.0
MONOCYTES_7
125.9
MONOCYTES_8
125.9
MONOCYTES_9
125.8
MONOCYTES_10
125.2
MONOCYTES_11
125.1
MONOCYTES_12
124.0
MONOCYTES_13
123.9
MONOCYTES_14
123.9
MONOCYTES_15
123.6
MONOCYTES_16
123.6
MONOCYTES_17
123.3
MONOCYTES_18
122.4
MONOCYTES_19
122.1
MONOCYTES_20
120.8
MONOCYTES_21
119.9
MONOCYTES_22
119.8
MONOCYTES_23
119.4
MONOCYTES_24
119.2
MONOCYTES_25
118.9
MONOCYTES_26
118.5
MONOCYTES_27
117.0
MONOCYTES_28
116.6
MONOCYTES_29
116.0
MONOCYTES_30
115.9
MONOCYTES_31
115.5
MONOCYTES_32
113.8
MONOCYTES_33
113.2
MONOCYTES_34
113.2
MONOCYTES_35
113.0
MONOCYTES_36
112.6
MONOCYTES_37
111.2
MONOCYTES_38
110.6
MONOCYTES_39
109.1
MONOCYTES_40
109.0
MONOCYTES_41
108.2
MONOCYTES_42
107.6
MONOCYTES_43
107.3
MONOCYTES_44
107.1
MONOCYTES_45
106.7
MONOCYTES_46
106.0
MONOCYTES_47
105.0
MONOCYTES_48
104.4
MONOCYTES_49
103.7
MONOCYTES_50
103.5
MONOCYTES_51
103.2
MONOCYTES_52
102.8
MONOCYTES_53
102.8
MONOCYTES_54
102.5
MONOCYTES_55
101.4
MONOCYTES_56
101.3
MONOCYTES_57
101.0
MONOCYTES_58
100.7
MONOCYTES_59
100.6
MONOCYTES_60
100.2
MONOCYTES_61
98.4
MONOCYTES_62
98.1
MONOCYTES_63
97.8
MONOCYTES_64
95.7
MONOCYTES_65
95.2
MONOCYTES_66
94.4
MONOCYTES_67
93.3
MONOCYTES_68
93.2
MONOCYTES_69
93.0
MONOCYTES_70
92.8
MONOCYTES_71
92.4
MONOCYTES_72
90.2
MONOCYTES_73
89.5
MONOCYTES_74
89.4
MONOCYTES_75
89.2
MONOCYTES_76
89.0
MONOCYTES_77
88.0
MONOCYTES_78
87.8
MONOCYTES_79
85.1
MONOCYTES_80
84.3
MONOCYTES_81
83.3
MONOCYTES_82
83.2
MONOCYTES_83
82.2
MONOCYTES_84
82.0
MONOCYTES_85
80.4
MONOCYTES_86
79.9
MONOCYTES_87
76.9
MONOCYTES_88
75.5
MONOCYTES_89
75.4
MONOCYTES_90
74.4
MONOCYTES_91
67.9
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Non-classical monocyte TPM: 105.9
Samples: 90
Max TPM: 166.3
Min TPM: 58.9
M2_1
166.3
M2_2
141.7
M2_3
141.6
M2_4
138.4
M2_5
137.0
M2_6
136.0
M2_7
134.3
M2_8
132.8
M2_9
132.6
M2_10
130.3
M2_11
129.0
M2_12
127.6
M2_13
126.3
M2_14
125.6
M2_15
124.6
M2_16
124.3
M2_17
123.1
M2_18
122.7
M2_19
122.3
M2_20
121.2
M2_21
121.1
M2_22
121.0
M2_23
120.6
M2_24
120.5
M2_25
119.8
M2_26
119.3
M2_27
118.8
M2_28
118.3
M2_29
117.8
M2_30
117.7
M2_31
117.1
M2_32
116.3
M2_33
115.8
M2_34
115.7
M2_35
115.0
M2_36
114.1
M2_37
113.0
M2_38
112.3
M2_39
110.7
M2_40
110.2
M2_41
110.0
M2_42
110.0
M2_43
108.0
M2_44
107.9
M2_45
107.0
M2_46
106.8
M2_47
106.7
M2_48
105.6
M2_49
105.2
M2_50
104.0
M2_51
103.5
M2_52
101.6
M2_53
100.8
M2_54
100.0
M2_55
100.0
M2_56
99.8
M2_57
99.5
M2_58
98.2
M2_59
98.0
M2_60
97.8
M2_61
97.7
M2_62
96.3
M2_63
95.1
M2_64
93.2
M2_65
92.5
M2_66
90.5
M2_67
89.6
M2_68
88.7
M2_69
88.4
M2_70
88.2
M2_71
88.2
M2_72
87.4
M2_73
87.1
M2_74
86.8
M2_75
86.2
M2_76
84.8
M2_77
84.6
M2_78
84.4
M2_79
83.1
M2_80
81.7
M2_81
80.7
M2_82
78.1
M2_83
77.6
M2_84
74.7
M2_85
74.6
M2_86
73.6
M2_87
72.5
M2_88
66.1
M2_89
60.8
M2_90
58.9
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