A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
6.0
nTPM
Monaco:
53.2
nTPM
Schmiedel:
98.6
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
6.0
HPA sample
nTPM
NK-cell nTPM: 6.0
Samples: 6
Max nTPM: 14.0
Min nTPM: 2.7
P10809_1013
6.2
P10809_1033
2.7
P10809_1052
5.1
P10809_1071
4.3
P10809_1093
14.0
P10809_1103
3.5
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
53.2
Monaco sample
nTPM
NK-cell nTPM: 53.2
Samples: 4
Max nTPM: 59.9
Min nTPM: 46.1
RHH5316_R3683
46.1
RHH5224_R3596
47.3
RHH5253_R3625
59.6
RHH5282_R3654
59.9
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
98.6
Schmiedel sample id
TPM
NK-cell TPM: 98.6
Samples: 90
Max TPM: 158.8
Min TPM: 59.1
NK_1
158.8
NK_2
134.8
NK_3
133.4
NK_4
133.2
NK_5
131.2
NK_6
131.1
NK_7
130.8
NK_8
129.5
NK_9
124.8
NK_10
123.5
NK_11
121.2
NK_12
121.1
NK_13
120.6
NK_14
120.4
NK_15
119.3
NK_16
118.9
NK_17
116.6
NK_18
112.0
NK_19
110.8
NK_20
110.3
NK_21
108.2
NK_22
108.0
NK_23
107.9
NK_24
107.4
NK_25
107.3
NK_26
106.0
NK_27
104.9
NK_28
104.8
NK_29
104.0
NK_30
103.2
NK_31
103.0
NK_32
103.0
NK_33
102.9
NK_34
102.4
NK_35
102.3
NK_36
101.8
NK_37
101.6
NK_38
101.2
NK_39
100.7
NK_40
100.0
NK_41
100.0
NK_42
99.5
NK_43
97.9
NK_44
97.8
NK_45
96.8
NK_46
96.7
NK_47
95.9
NK_48
95.8
NK_49
95.1
NK_50
95.0
NK_51
94.2
NK_52
93.9
NK_53
93.7
NK_54
92.5
NK_55
91.9
NK_56
89.3
NK_57
88.9
NK_58
88.8
NK_59
88.8
NK_60
88.0
NK_61
87.6
NK_62
87.5
NK_63
87.3
NK_64
87.1
NK_65
86.9
NK_66
86.7
NK_67
86.2
NK_68
85.6
NK_69
85.1
NK_70
84.7
NK_71
84.6
NK_72
84.3
NK_73
83.9
NK_74
83.9
NK_75
82.7
NK_76
81.1
NK_77
80.7
NK_78
80.7
NK_79
79.9
NK_80
78.0
NK_81
77.5
NK_82
76.6
NK_83
75.7
NK_84
75.0
NK_85
73.8
NK_86
73.0
NK_87
71.9
NK_88
70.8
NK_89
69.8
NK_90
59.1
Show allShow less
We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
The Human Protein Atlas project is funded
