A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
15.1
nTPM
Monaco:
89.2
nTPM
Schmiedel:
39.9
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
15.1
HPA sample
nTPM
Memory B-cell nTPM: 15.1
Samples: 6
Max nTPM: 18.4
Min nTPM: 9.5
P10809_1017
9.5
P10809_1025
17.5
P10809_1044
16.5
P10809_1063
18.4
P10809_1092
12.2
P10809_1105
16.6
Naive B-cell nTPM: 11.1
Samples: 6
Max nTPM: 19.7
Min nTPM: 1.9
P10809_1011
11.2
P10809_1029
19.7
P10809_1048
1.9
P10809_1067
9.1
P10809_1091
8.4
P10809_1104
16.5
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
89.2
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 57.4
Samples: 4
Max nTPM: 64.8
Min nTPM: 51.7
RHH5310_R3677
58.8
RHH5218_R3590
64.8
RHH5247_R3619
51.7
RHH5276_R3648
54.1
Naive B-cell nTPM: 70.5
Samples: 4
Max nTPM: 79.5
Min nTPM: 60.6
RHH5308_R3675
69.1
RHH5216_R3588
72.9
RHH5245_R3617
60.6
RHH5274_R3646
79.5
Non-switched memory B-cell nTPM: 71.8
Samples: 4
Max nTPM: 84.9
Min nTPM: 62.2
RHH5309_R3676
62.2
RHH5217_R3589
84.9
RHH5246_R3618
68.5
RHH5275_R3647
71.7
Plasmablast nTPM: 41.9
Samples: 4
Max nTPM: 44.4
Min nTPM: 39.2
RHH5312_R3679
44.4
RHH5220_R3592
39.2
RHH5249_R3621
40.4
RHH5278_R3650
43.7
Switched memory B-cell nTPM: 89.3
Samples: 4
Max nTPM: 106.1
Min nTPM: 73.0
RHH5311_R3678
82.9
RHH5219_R3591
95.0
RHH5248_R3620
106.1
RHH5277_R3649
73.0
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
39.9
Schmiedel sample id
TPM
Naive B-cell TPM: 39.9
Samples: 91
Max TPM: 49.7
Min TPM: 23.8
B_CELL_NAIVE_1
49.7
B_CELL_NAIVE_2
49.3
B_CELL_NAIVE_3
49.2
B_CELL_NAIVE_4
47.1
B_CELL_NAIVE_5
46.8
B_CELL_NAIVE_6
45.5
B_CELL_NAIVE_7
45.3
B_CELL_NAIVE_8
44.8
B_CELL_NAIVE_9
44.7
B_CELL_NAIVE_10
44.6
B_CELL_NAIVE_11
44.5
B_CELL_NAIVE_12
44.0
B_CELL_NAIVE_13
43.9
B_CELL_NAIVE_14
43.7
B_CELL_NAIVE_15
43.7
B_CELL_NAIVE_16
43.5
B_CELL_NAIVE_17
43.5
B_CELL_NAIVE_18
43.3
B_CELL_NAIVE_19
43.0
B_CELL_NAIVE_20
42.6
B_CELL_NAIVE_21
42.5
B_CELL_NAIVE_22
42.5
B_CELL_NAIVE_23
42.3
B_CELL_NAIVE_24
42.2
B_CELL_NAIVE_25
42.1
B_CELL_NAIVE_26
42.0
B_CELL_NAIVE_27
41.8
B_CELL_NAIVE_28
41.7
B_CELL_NAIVE_29
41.7
B_CELL_NAIVE_30
41.5
B_CELL_NAIVE_31
41.4
B_CELL_NAIVE_32
41.4
B_CELL_NAIVE_33
41.3
B_CELL_NAIVE_34
41.0
B_CELL_NAIVE_35
40.9
B_CELL_NAIVE_36
40.7
B_CELL_NAIVE_37
40.7
B_CELL_NAIVE_38
40.6
B_CELL_NAIVE_39
40.6
B_CELL_NAIVE_40
40.5
B_CELL_NAIVE_41
40.5
B_CELL_NAIVE_42
40.3
B_CELL_NAIVE_43
40.3
B_CELL_NAIVE_44
40.2
B_CELL_NAIVE_45
40.1
B_CELL_NAIVE_46
40.1
B_CELL_NAIVE_47
39.9
B_CELL_NAIVE_48
39.8
B_CELL_NAIVE_49
39.8
B_CELL_NAIVE_50
39.8
B_CELL_NAIVE_51
39.7
B_CELL_NAIVE_52
39.7
B_CELL_NAIVE_53
39.5
B_CELL_NAIVE_54
39.4
B_CELL_NAIVE_55
39.3
B_CELL_NAIVE_56
39.3
B_CELL_NAIVE_57
39.2
B_CELL_NAIVE_58
39.2
B_CELL_NAIVE_59
39.1
B_CELL_NAIVE_60
39.0
B_CELL_NAIVE_61
39.0
B_CELL_NAIVE_62
38.6
B_CELL_NAIVE_63
38.3
B_CELL_NAIVE_64
38.2
B_CELL_NAIVE_65
38.1
B_CELL_NAIVE_66
38.0
B_CELL_NAIVE_67
37.9
B_CELL_NAIVE_68
37.8
B_CELL_NAIVE_69
37.7
B_CELL_NAIVE_70
37.6
B_CELL_NAIVE_71
37.3
B_CELL_NAIVE_72
37.0
B_CELL_NAIVE_73
36.7
B_CELL_NAIVE_74
36.7
B_CELL_NAIVE_75
36.5
B_CELL_NAIVE_76
36.4
B_CELL_NAIVE_77
36.4
B_CELL_NAIVE_78
36.2
B_CELL_NAIVE_79
36.0
B_CELL_NAIVE_80
36.0
B_CELL_NAIVE_81
36.0
B_CELL_NAIVE_82
35.5
B_CELL_NAIVE_83
35.4
B_CELL_NAIVE_84
35.1
B_CELL_NAIVE_85
34.3
B_CELL_NAIVE_86
34.1
B_CELL_NAIVE_87
32.9
B_CELL_NAIVE_88
32.8
B_CELL_NAIVE_89
31.5
B_CELL_NAIVE_90
31.3
B_CELL_NAIVE_91
23.8
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