A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
17.0
nTPM
Monaco:
96.4
nTPM
Schmiedel:
45.3
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
17.0
HPA sample
nTPM
Classical monocyte nTPM: 11.2
Samples: 6
Max nTPM: 13.6
Min nTPM: 7.3
P10809_1003
13.6
P10809_1020
11.9
P10809_1039
9.9
P10809_1058
7.3
P10809_1080
12.9
P10809_1107
11.7
Intermediate monocyte nTPM: 11.5
Samples: 6
Max nTPM: 16.0
Min nTPM: 4.4
P10809_1004
16.0
P10809_1023
13.6
P10809_1042
4.4
P10809_1061
15.0
P10809_1081
7.9
P10809_1108
12.2
Non-classical monocyte nTPM: 17.1
Samples: 5
Max nTPM: 28.4
Min nTPM: 11.5
P10809_1005
11.5
P10809_1053
12.4
P10809_1072
28.4
P10809_1082
16.8
P10809_1109
16.2
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
96.4
Monaco sample
nTPM
Classical monocyte nTPM: 79.8
Samples: 4
Max nTPM: 96.3
Min nTPM: 71.5
RHH5313_R3680
71.5
RHH5221_R3593
72.8
RHH5250_R3622
78.4
RHH5279_R3651
96.3
Intermediate monocyte nTPM: 76.9
Samples: 4
Max nTPM: 98.0
Min nTPM: 44.0
RHH5314_R3681
72.7
RHH5222_R3594
44.0
RHH5251_R3623
98.0
RHH5280_R3652
92.7
Non-classical monocyte nTPM: 96.4
Samples: 4
Max nTPM: 117.4
Min nTPM: 88.0
RHH5315_R3682
88.0
RHH5223_R3595
90.1
RHH5252_R3624
90.1
RHH5281_R3653
117.4
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
45.3
Schmiedel sample id
TPM
Classical monocyte TPM: 26.3
Samples: 91
Max TPM: 32.1
Min TPM: 19.5
MONOCYTES_1
32.1
MONOCYTES_2
32.0
MONOCYTES_3
31.7
MONOCYTES_4
31.3
MONOCYTES_5
31.2
MONOCYTES_6
31.0
MONOCYTES_7
30.6
MONOCYTES_8
30.5
MONOCYTES_9
30.2
MONOCYTES_10
30.2
MONOCYTES_11
30.2
MONOCYTES_12
30.2
MONOCYTES_13
29.8
MONOCYTES_14
29.5
MONOCYTES_15
29.3
MONOCYTES_16
29.2
MONOCYTES_17
29.1
MONOCYTES_18
29.1
MONOCYTES_19
29.0
MONOCYTES_20
28.9
MONOCYTES_21
28.8
MONOCYTES_22
28.7
MONOCYTES_23
28.4
MONOCYTES_24
28.3
MONOCYTES_25
28.2
MONOCYTES_26
28.1
MONOCYTES_27
28.0
MONOCYTES_28
27.8
MONOCYTES_29
27.8
MONOCYTES_30
27.7
MONOCYTES_31
27.5
MONOCYTES_32
27.4
MONOCYTES_33
27.3
MONOCYTES_34
27.2
MONOCYTES_35
27.0
MONOCYTES_36
27.0
MONOCYTES_37
26.9
MONOCYTES_38
26.8
MONOCYTES_39
26.7
MONOCYTES_40
26.6
MONOCYTES_41
26.6
MONOCYTES_42
26.5
MONOCYTES_43
26.5
MONOCYTES_44
26.4
MONOCYTES_45
26.4
MONOCYTES_46
26.4
MONOCYTES_47
25.9
MONOCYTES_48
25.5
MONOCYTES_49
25.5
MONOCYTES_50
25.4
MONOCYTES_51
25.3
MONOCYTES_52
25.2
MONOCYTES_53
25.2
MONOCYTES_54
25.2
MONOCYTES_55
24.9
MONOCYTES_56
24.9
MONOCYTES_57
24.9
MONOCYTES_58
24.9
MONOCYTES_59
24.8
MONOCYTES_60
24.8
MONOCYTES_61
24.7
MONOCYTES_62
24.5
MONOCYTES_63
24.5
MONOCYTES_64
24.5
MONOCYTES_65
24.5
MONOCYTES_66
24.4
MONOCYTES_67
24.4
MONOCYTES_68
24.4
MONOCYTES_69
24.3
MONOCYTES_70
24.2
MONOCYTES_71
24.2
MONOCYTES_72
24.1
MONOCYTES_73
24.1
MONOCYTES_74
24.0
MONOCYTES_75
23.9
MONOCYTES_76
23.7
MONOCYTES_77
23.7
MONOCYTES_78
23.4
MONOCYTES_79
23.2
MONOCYTES_80
23.2
MONOCYTES_81
23.1
MONOCYTES_82
23.1
MONOCYTES_83
23.0
MONOCYTES_84
22.9
MONOCYTES_85
22.5
MONOCYTES_86
22.4
MONOCYTES_87
22.3
MONOCYTES_88
21.1
MONOCYTES_89
20.7
MONOCYTES_90
20.5
MONOCYTES_91
19.5
Show allShow less
Non-classical monocyte TPM: 45.3
Samples: 90
Max TPM: 57.1
Min TPM: 37.3
M2_1
57.1
M2_2
56.4
M2_3
55.2
M2_4
54.9
M2_5
53.8
M2_6
53.5
M2_7
52.8
M2_8
51.7
M2_9
50.8
M2_10
50.5
M2_11
50.1
M2_12
49.9
M2_13
49.8
M2_14
49.7
M2_15
49.7
M2_16
49.7
M2_17
49.6
M2_18
48.9
M2_19
48.3
M2_20
48.3
M2_21
48.3
M2_22
48.0
M2_23
47.9
M2_24
47.5
M2_25
47.2
M2_26
47.0
M2_27
46.8
M2_28
46.7
M2_29
46.7
M2_30
46.6
M2_31
46.6
M2_32
46.3
M2_33
46.3
M2_34
46.2
M2_35
46.2
M2_36
46.0
M2_37
45.9
M2_38
45.9
M2_39
45.9
M2_40
45.8
M2_41
45.8
M2_42
45.7
M2_43
45.5
M2_44
45.5
M2_45
45.5
M2_46
45.2
M2_47
45.0
M2_48
44.7
M2_49
44.6
M2_50
44.5
M2_51
44.5
M2_52
44.1
M2_53
44.1
M2_54
44.0
M2_55
44.0
M2_56
43.6
M2_57
43.5
M2_58
43.4
M2_59
43.4
M2_60
43.3
M2_61
43.2
M2_62
42.6
M2_63
42.4
M2_64
42.4
M2_65
42.2
M2_66
42.2
M2_67
42.1
M2_68
41.8
M2_69
41.7
M2_70
41.7
M2_71
41.6
M2_72
41.5
M2_73
41.5
M2_74
41.3
M2_75
41.1
M2_76
41.0
M2_77
40.6
M2_78
40.5
M2_79
40.3
M2_80
39.6
M2_81
39.6
M2_82
39.4
M2_83
39.4
M2_84
39.2
M2_85
39.0
M2_86
38.9
M2_87
38.8
M2_88
37.8
M2_89
37.5
M2_90
37.3
Show allShow less
We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
The Human Protein Atlas project is funded
