MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:15.9 nTPM
HPA Brain:40.8 nTPM
GTEx:15.9 nTPM
FANTOM5:22.2 Scaled Tags Per Million
Mouse:0.3 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 40.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 13.3
2666 Male, age 74, left hemisphere 19.4
1870 Female, age 42, unknown 15.5
2586 Male, age 75, left hemisphere 15.3
2019 Male, age 18, unknown 15.2
1827 Male, age 72, unknown 13.8
2411 Female, age 72, unknown 13.8
2828 Female, age 72, unknown 11.5
1830 Male, age 51, unknown 10.8
1833 Male, age 53, unknown 10.2
2219 Male, age 76, both hemispheres 7.5
Dorsal raphe nucleus
nTPM: 29.1
2298 Female, age 72, unknown 55.3
2016 Female, age 72, unknown 36.5
1828 Male, age 53, unknown 22.4
2750 Male, age 76, both hemispheres 16.6
2047 Male, age 72, unknown 14.9
Inferior colliculus
nTPM: 13.2
2849 Male, age 72, unknown 13.4
1890 Male, age 53, unknown 13.3
1848 Female, age 42, unknown 13.1
2097 Female, age 72, unknown 13.1
Median raphe nucleus
nTPM: 12.1
2220 Male, age 76, midline 12.1
Periaquaductal grey, anterior
nTPM: 26.4
1795 Male, age 51, unknown 42.8
2502 Female, age 75, unknown 19.4
1947 Male, age 18, unknown 17.0
Periaquaductal grey, dorsal
nTPM: 21.0
2850 Male, age 76, both hemispheres 25.4
1840 Male, age 53, unknown 22.2
2464 Female, age 72, unknown 18.6
1831 Male, age 72, unknown 17.7
Periaquaductal grey, lateral
nTPM: 40.8
2272 Male, age 74, both hemispheres 79.2
2140 Male, age 76, both hemispheres 25.2
2053 Male, age 18, unknown 18.1
Pretectal area
nTPM: 18.4
2273 Male, age 74, both hemispheres 44.7
2224 Female, age 72, unknown 25.3
2825 Male, age 18, unknown 20.6
2316 Male, age 76, right hemisphere 19.3
2407 Male, age 75, both hemispheres 16.6
2007 Male, age 72, unknown 15.7
1815 Male, age 53, unknown 14.7
1944 Female, age 72, unknown 13.5
2667 Female, age 75, unknown 11.1
1817 Female, age 42, unknown 10.8
1816 Male, age 51, unknown 10.0
Red nucleus
nTPM: 15.7
2227 Male, age 72, unknown 23.0
2584 Male, age 75, left hemisphere 22.6
2785 Male, age 18, unknown 20.5
2725 Female, age 75, unknown 17.6
2823 Male, age 76, right hemisphere 16.9
1904 Male, age 53, unknown 15.8
2769 Male, age 72, unknown 15.4
2588 Male, age 74, left hemisphere 13.1
2503 Female, age 72, unknown 12.2
1865 Male, age 51, unknown 11.6
1821 Female, age 72, unknown 9.9
1954 Female, age 42, unknown 9.2
Substantia nigra
nTPM: 17.7
2699 Male, age 18, unknown 25.2
2590 Female, age 75, unknown 23.3
1941 Male, age 53, unknown 22.1
2583 Male, age 75, right hemisphere 19.4
1851 Male, age 51, unknown 18.0
1916 Female, age 42, unknown 16.4
2665 Male, age 74, both hemispheres 15.3
1889 Female, age 72, unknown 13.3
2241 Male, age 72, unknown 12.9
2409 Female, age 72, unknown 10.9
Superior colliculus
nTPM: 17.8
1995 Male, age 72, unknown 28.7
1913 Female, age 42, unknown 21.6
2664 Male, age 75, both hemispheres 21.6
2668 Female, age 75, unknown 20.2
1839 Male, age 51, unknown 16.3
1796 Male, age 53, unknown 16.2
2587 Male, age 74, left hemisphere 15.8
2261 Male, age 18, unknown 15.5
2087 Female, age 72, unknown 13.2
1895 Male, age 76, right hemisphere 8.6
Ventral tegmental area
nTPM: 15.5
1942 Male, age 51, unknown 21.3
2021 Male, age 53, unknown 18.1
2218 Male, age 76, both hemispheres 16.5
1915 Female, age 42, unknown 14.0
2223 Female, age 72, unknown 13.2
2410 Female, age 72, unknown 10.2

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 15.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 15.9
Samples: 183

Max nTPM: 216.8
Min nTPM: 0.4
Std nTPM: 22.5
Median nTPM: 8.1
GTEX-X4EP-0011-R2B-SM-3P625 60-69 years, female 216.8
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 112.2
GTEX-1CB4J-0011-R2a-SM-9WG5N 60-69 years, male 83.8
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 73.2
GTEX-12696-0011-R2b-SM-GHWPY 60-69 years, male 72.6
GTEX-12WSF-0011-R2a-SM-5DUVU 70-79 years, male 60.0
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 57.4
GTEX-15RJE-0011-R2b-SM-79OMP 40-49 years, male 55.1
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 53.0
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 53.0
GTEX-14PN4-0011-R2a-SM-6EU2Y 50-59 years, male 52.9
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 22.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 22.2
FF:10158-103A5 76 years, female 22.2

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 0.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 0.3
Samples: 4

Max nTPM: 0.6
Min nTPM: 0.1
Sample A Male 0.6
Sample B Male 0.1
Sample C Female 0.1
Sample D Female 0.4

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