A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
16.1
nTPM
Monaco:
80.2
nTPM
Schmiedel:
47.5
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
16.1
HPA sample
nTPM
Memory B-cell nTPM: 16.1
Samples: 6
Max nTPM: 22.6
Min nTPM: 10.8
P10809_1017
11.7
P10809_1025
19.9
P10809_1044
22.6
P10809_1063
17.6
P10809_1092
10.8
P10809_1105
13.8
Naive B-cell nTPM: 14.3
Samples: 6
Max nTPM: 17.4
Min nTPM: 9.6
P10809_1011
17.4
P10809_1029
15.7
P10809_1048
12.2
P10809_1067
9.6
P10809_1091
15.0
P10809_1104
15.6
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
80.2
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 55.9
Samples: 4
Max nTPM: 71.5
Min nTPM: 41.8
RHH5310_R3677
71.5
RHH5218_R3590
41.8
RHH5247_R3619
63.7
RHH5276_R3648
46.4
Naive B-cell nTPM: 70.3
Samples: 4
Max nTPM: 97.2
Min nTPM: 52.1
RHH5308_R3675
67.2
RHH5216_R3588
97.2
RHH5245_R3617
52.1
RHH5274_R3646
64.5
Non-switched memory B-cell nTPM: 51.8
Samples: 4
Max nTPM: 56.0
Min nTPM: 48.2
RHH5309_R3676
56.0
RHH5217_R3589
54.5
RHH5246_R3618
48.4
RHH5275_R3647
48.2
Plasmablast nTPM: 80.2
Samples: 4
Max nTPM: 105.5
Min nTPM: 55.0
RHH5312_R3679
88.1
RHH5220_R3592
105.5
RHH5249_R3621
55.0
RHH5278_R3650
72.3
Switched memory B-cell nTPM: 59.3
Samples: 4
Max nTPM: 74.9
Min nTPM: 42.4
RHH5311_R3678
74.9
RHH5219_R3591
55.6
RHH5248_R3620
64.1
RHH5277_R3649
42.4
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
47.5
Schmiedel sample id
TPM
Naive B-cell TPM: 47.5
Samples: 91
Max TPM: 88.6
Min TPM: 8.5
B_CELL_NAIVE_1
88.6
B_CELL_NAIVE_2
80.8
B_CELL_NAIVE_3
80.6
B_CELL_NAIVE_4
80.0
B_CELL_NAIVE_5
76.6
B_CELL_NAIVE_6
73.9
B_CELL_NAIVE_7
73.7
B_CELL_NAIVE_8
73.6
B_CELL_NAIVE_9
71.7
B_CELL_NAIVE_10
71.6
B_CELL_NAIVE_11
71.2
B_CELL_NAIVE_12
70.4
B_CELL_NAIVE_13
69.7
B_CELL_NAIVE_14
69.1
B_CELL_NAIVE_15
68.7
B_CELL_NAIVE_16
68.3
B_CELL_NAIVE_17
67.1
B_CELL_NAIVE_18
66.2
B_CELL_NAIVE_19
65.2
B_CELL_NAIVE_20
63.2
B_CELL_NAIVE_21
63.0
B_CELL_NAIVE_22
62.3
B_CELL_NAIVE_23
62.1
B_CELL_NAIVE_24
61.8
B_CELL_NAIVE_25
61.3
B_CELL_NAIVE_26
60.4
B_CELL_NAIVE_27
59.3
B_CELL_NAIVE_28
59.2
B_CELL_NAIVE_29
58.2
B_CELL_NAIVE_30
58.0
B_CELL_NAIVE_31
57.6
B_CELL_NAIVE_32
57.4
B_CELL_NAIVE_33
57.4
B_CELL_NAIVE_34
57.1
B_CELL_NAIVE_35
55.9
B_CELL_NAIVE_36
55.6
B_CELL_NAIVE_37
55.6
B_CELL_NAIVE_38
55.5
B_CELL_NAIVE_39
54.7
B_CELL_NAIVE_40
54.5
B_CELL_NAIVE_41
53.3
B_CELL_NAIVE_42
53.0
B_CELL_NAIVE_43
53.0
B_CELL_NAIVE_44
51.0
B_CELL_NAIVE_45
50.9
B_CELL_NAIVE_46
50.6
B_CELL_NAIVE_47
49.9
B_CELL_NAIVE_48
48.9
B_CELL_NAIVE_49
48.2
B_CELL_NAIVE_50
47.3
B_CELL_NAIVE_51
47.1
B_CELL_NAIVE_52
45.9
B_CELL_NAIVE_53
45.8
B_CELL_NAIVE_54
44.9
B_CELL_NAIVE_55
44.4
B_CELL_NAIVE_56
43.8
B_CELL_NAIVE_57
42.3
B_CELL_NAIVE_58
39.5
B_CELL_NAIVE_59
39.1
B_CELL_NAIVE_60
39.0
B_CELL_NAIVE_61
37.4
B_CELL_NAIVE_62
37.1
B_CELL_NAIVE_63
36.5
B_CELL_NAIVE_64
36.4
B_CELL_NAIVE_65
35.0
B_CELL_NAIVE_66
34.8
B_CELL_NAIVE_67
33.1
B_CELL_NAIVE_68
33.0
B_CELL_NAIVE_69
33.0
B_CELL_NAIVE_70
31.8
B_CELL_NAIVE_71
31.0
B_CELL_NAIVE_72
29.5
B_CELL_NAIVE_73
28.6
B_CELL_NAIVE_74
27.8
B_CELL_NAIVE_75
27.4
B_CELL_NAIVE_76
26.2
B_CELL_NAIVE_77
24.4
B_CELL_NAIVE_78
23.3
B_CELL_NAIVE_79
22.1
B_CELL_NAIVE_80
21.0
B_CELL_NAIVE_81
19.8
B_CELL_NAIVE_82
18.7
B_CELL_NAIVE_83
18.7
B_CELL_NAIVE_84
17.8
B_CELL_NAIVE_85
17.8
B_CELL_NAIVE_86
15.3
B_CELL_NAIVE_87
13.4
B_CELL_NAIVE_88
11.5
B_CELL_NAIVE_89
8.8
B_CELL_NAIVE_90
8.5
B_CELL_NAIVE_91
8.5
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