A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
14.5
nTPM
Monaco:
38.1
nTPM
Schmiedel:
25.6
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
14.5
HPA sample
nTPM
Classical monocyte nTPM: 9.8
Samples: 6
Max nTPM: 13.1
Min nTPM: 6.6
P10809_1003
10.8
P10809_1020
13.1
P10809_1039
9.1
P10809_1058
6.6
P10809_1080
7.7
P10809_1107
11.6
Intermediate monocyte nTPM: 11.6
Samples: 6
Max nTPM: 18.6
Min nTPM: 6.1
P10809_1004
18.6
P10809_1023
8.3
P10809_1042
16.9
P10809_1061
13.0
P10809_1081
7.0
P10809_1108
6.1
Non-classical monocyte nTPM: 14.5
Samples: 5
Max nTPM: 21.6
Min nTPM: 8.3
P10809_1005
17.5
P10809_1053
10.3
P10809_1072
21.6
P10809_1082
8.3
P10809_1109
15.0
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
38.1
Monaco sample
nTPM
Classical monocyte nTPM: 34.0
Samples: 4
Max nTPM: 42.6
Min nTPM: 29.5
RHH5313_R3680
34.0
RHH5221_R3593
42.6
RHH5250_R3622
29.8
RHH5279_R3651
29.5
Intermediate monocyte nTPM: 37.6
Samples: 4
Max nTPM: 40.8
Min nTPM: 35.1
RHH5314_R3681
36.2
RHH5222_R3594
40.8
RHH5251_R3623
38.2
RHH5280_R3652
35.1
Non-classical monocyte nTPM: 38.1
Samples: 4
Max nTPM: 44.7
Min nTPM: 30.6
RHH5315_R3682
44.7
RHH5223_R3595
32.9
RHH5252_R3624
44.1
RHH5281_R3653
30.6
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
25.6
Schmiedel sample id
TPM
Classical monocyte TPM: 25.6
Samples: 91
Max TPM: 43.2
Min TPM: 11.9
MONOCYTES_1
43.2
MONOCYTES_2
42.2
MONOCYTES_3
39.5
MONOCYTES_4
39.0
MONOCYTES_5
38.7
MONOCYTES_6
36.5
MONOCYTES_7
36.4
MONOCYTES_8
36.4
MONOCYTES_9
36.3
MONOCYTES_10
36.2
MONOCYTES_11
36.0
MONOCYTES_12
35.1
MONOCYTES_13
34.8
MONOCYTES_14
34.4
MONOCYTES_15
34.2
MONOCYTES_16
34.1
MONOCYTES_17
33.6
MONOCYTES_18
33.4
MONOCYTES_19
32.5
MONOCYTES_20
32.3
MONOCYTES_21
32.2
MONOCYTES_22
31.8
MONOCYTES_23
31.6
MONOCYTES_24
31.6
MONOCYTES_25
31.3
MONOCYTES_26
30.9
MONOCYTES_27
30.5
MONOCYTES_28
30.3
MONOCYTES_29
30.0
MONOCYTES_30
29.6
MONOCYTES_31
29.5
MONOCYTES_32
29.1
MONOCYTES_33
29.0
MONOCYTES_34
29.0
MONOCYTES_35
28.2
MONOCYTES_36
28.2
MONOCYTES_37
28.2
MONOCYTES_38
27.9
MONOCYTES_39
27.3
MONOCYTES_40
27.3
MONOCYTES_41
27.2
MONOCYTES_42
26.1
MONOCYTES_43
26.1
MONOCYTES_44
26.0
MONOCYTES_45
26.0
MONOCYTES_46
24.7
MONOCYTES_47
24.3
MONOCYTES_48
24.0
MONOCYTES_49
23.8
MONOCYTES_50
23.7
MONOCYTES_51
23.5
MONOCYTES_52
23.5
MONOCYTES_53
22.5
MONOCYTES_54
22.4
MONOCYTES_55
22.3
MONOCYTES_56
22.2
MONOCYTES_57
22.1
MONOCYTES_58
22.0
MONOCYTES_59
21.8
MONOCYTES_60
21.8
MONOCYTES_61
21.7
MONOCYTES_62
21.6
MONOCYTES_63
21.3
MONOCYTES_64
20.9
MONOCYTES_65
20.2
MONOCYTES_66
20.0
MONOCYTES_67
19.8
MONOCYTES_68
19.8
MONOCYTES_69
19.7
MONOCYTES_70
19.6
MONOCYTES_71
19.1
MONOCYTES_72
18.7
MONOCYTES_73
18.3
MONOCYTES_74
17.7
MONOCYTES_75
17.7
MONOCYTES_76
17.6
MONOCYTES_77
17.5
MONOCYTES_78
17.4
MONOCYTES_79
17.4
MONOCYTES_80
16.3
MONOCYTES_81
15.7
MONOCYTES_82
15.1
MONOCYTES_83
15.1
MONOCYTES_84
14.9
MONOCYTES_85
13.6
MONOCYTES_86
12.9
MONOCYTES_87
12.8
MONOCYTES_88
12.4
MONOCYTES_89
12.3
MONOCYTES_90
12.3
MONOCYTES_91
11.9
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Non-classical monocyte TPM: 22.6
Samples: 90
Max TPM: 41.9
Min TPM: 5.1
M2_1
41.9
M2_2
37.9
M2_3
37.3
M2_4
36.2
M2_5
36.1
M2_6
35.2
M2_7
34.6
M2_8
34.3
M2_9
33.6
M2_10
33.5
M2_11
33.3
M2_12
33.1
M2_13
32.5
M2_14
32.1
M2_15
31.5
M2_16
30.3
M2_17
30.0
M2_18
29.4
M2_19
28.8
M2_20
28.8
M2_21
28.8
M2_22
28.7
M2_23
28.7
M2_24
28.4
M2_25
28.2
M2_26
27.9
M2_27
27.9
M2_28
27.3
M2_29
27.1
M2_30
26.9
M2_31
26.9
M2_32
26.5
M2_33
26.3
M2_34
26.3
M2_35
25.7
M2_36
25.3
M2_37
25.1
M2_38
24.7
M2_39
24.6
M2_40
24.5
M2_41
24.4
M2_42
24.1
M2_43
23.9
M2_44
23.9
M2_45
23.7
M2_46
23.6
M2_47
23.3
M2_48
22.6
M2_49
22.6
M2_50
22.5
M2_51
22.0
M2_52
21.8
M2_53
21.7
M2_54
21.1
M2_55
20.7
M2_56
20.3
M2_57
20.0
M2_58
19.3
M2_59
18.4
M2_60
18.2
M2_61
18.0
M2_62
17.9
M2_63
17.2
M2_64
16.7
M2_65
16.0
M2_66
16.0
M2_67
15.8
M2_68
15.2
M2_69
15.1
M2_70
15.0
M2_71
15.0
M2_72
14.9
M2_73
14.8
M2_74
14.7
M2_75
14.5
M2_76
13.6
M2_77
13.6
M2_78
13.4
M2_79
11.5
M2_80
11.4
M2_81
11.2
M2_82
10.6
M2_83
10.2
M2_84
10.2
M2_85
10.2
M2_86
9.4
M2_87
8.6
M2_88
7.2
M2_89
6.5
M2_90
5.1
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