A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
4.4
nTPM
Monaco:
142.4
nTPM
Schmiedel:
65.1
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
4.4
HPA sample
nTPM
Memory B-cell nTPM: 4.4
Samples: 6
Max nTPM: 5.1
Min nTPM: 3.5
P10809_1017
5.1
P10809_1025
4.7
P10809_1044
4.9
P10809_1063
4.4
P10809_1092
3.7
P10809_1105
3.5
Naive B-cell nTPM: 3.9
Samples: 6
Max nTPM: 6.5
Min nTPM: 1.2
P10809_1011
3.4
P10809_1029
3.5
P10809_1048
1.2
P10809_1067
4.1
P10809_1091
6.5
P10809_1104
5.0
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
142.4
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 39.8
Samples: 4
Max nTPM: 47.9
Min nTPM: 32.6
RHH5310_R3677
35.8
RHH5218_R3590
47.9
RHH5247_R3619
32.6
RHH5276_R3648
43.1
Naive B-cell nTPM: 34.4
Samples: 4
Max nTPM: 40.4
Min nTPM: 29.9
RHH5308_R3675
30.4
RHH5216_R3588
29.9
RHH5245_R3617
40.4
RHH5274_R3646
37.0
Non-switched memory B-cell nTPM: 29.2
Samples: 4
Max nTPM: 42.4
Min nTPM: 18.6
RHH5309_R3676
22.6
RHH5217_R3589
18.6
RHH5246_R3618
33.0
RHH5275_R3647
42.4
Plasmablast nTPM: 142.5
Samples: 4
Max nTPM: 192.9
Min nTPM: 107.6
RHH5312_R3679
107.6
RHH5220_R3592
149.4
RHH5249_R3621
119.9
RHH5278_R3650
192.9
Switched memory B-cell nTPM: 42.2
Samples: 4
Max nTPM: 79.6
Min nTPM: 14.0
RHH5311_R3678
14.0
RHH5219_R3591
79.6
RHH5248_R3620
26.9
RHH5277_R3649
48.3
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
65.1
Schmiedel sample id
TPM
Naive B-cell TPM: 65.1
Samples: 91
Max TPM: 105.2
Min TPM: 42.3
B_CELL_NAIVE_1
105.2
B_CELL_NAIVE_2
105.1
B_CELL_NAIVE_3
104.3
B_CELL_NAIVE_4
97.4
B_CELL_NAIVE_5
94.0
B_CELL_NAIVE_6
88.0
B_CELL_NAIVE_7
87.3
B_CELL_NAIVE_8
85.8
B_CELL_NAIVE_9
85.1
B_CELL_NAIVE_10
76.9
B_CELL_NAIVE_11
76.5
B_CELL_NAIVE_12
76.1
B_CELL_NAIVE_13
75.9
B_CELL_NAIVE_14
74.5
B_CELL_NAIVE_15
74.4
B_CELL_NAIVE_16
73.5
B_CELL_NAIVE_17
73.2
B_CELL_NAIVE_18
71.4
B_CELL_NAIVE_19
71.2
B_CELL_NAIVE_20
70.7
B_CELL_NAIVE_21
70.1
B_CELL_NAIVE_22
69.1
B_CELL_NAIVE_23
68.9
B_CELL_NAIVE_24
68.9
B_CELL_NAIVE_25
68.8
B_CELL_NAIVE_26
68.8
B_CELL_NAIVE_27
68.8
B_CELL_NAIVE_28
68.6
B_CELL_NAIVE_29
67.6
B_CELL_NAIVE_30
67.4
B_CELL_NAIVE_31
67.1
B_CELL_NAIVE_32
66.9
B_CELL_NAIVE_33
66.7
B_CELL_NAIVE_34
66.3
B_CELL_NAIVE_35
65.7
B_CELL_NAIVE_36
65.6
B_CELL_NAIVE_37
65.5
B_CELL_NAIVE_38
64.4
B_CELL_NAIVE_39
64.3
B_CELL_NAIVE_40
64.2
B_CELL_NAIVE_41
63.8
B_CELL_NAIVE_42
63.8
B_CELL_NAIVE_43
63.4
B_CELL_NAIVE_44
63.3
B_CELL_NAIVE_45
62.6
B_CELL_NAIVE_46
62.5
B_CELL_NAIVE_47
62.4
B_CELL_NAIVE_48
62.3
B_CELL_NAIVE_49
62.3
B_CELL_NAIVE_50
62.3
B_CELL_NAIVE_51
62.2
B_CELL_NAIVE_52
61.2
B_CELL_NAIVE_53
60.7
B_CELL_NAIVE_54
60.5
B_CELL_NAIVE_55
60.3
B_CELL_NAIVE_56
60.1
B_CELL_NAIVE_57
60.0
B_CELL_NAIVE_58
60.0
B_CELL_NAIVE_59
59.7
B_CELL_NAIVE_60
59.6
B_CELL_NAIVE_61
59.0
B_CELL_NAIVE_62
58.6
B_CELL_NAIVE_63
58.6
B_CELL_NAIVE_64
58.5
B_CELL_NAIVE_65
58.1
B_CELL_NAIVE_66
58.1
B_CELL_NAIVE_67
58.1
B_CELL_NAIVE_68
58.0
B_CELL_NAIVE_69
57.7
B_CELL_NAIVE_70
57.3
B_CELL_NAIVE_71
57.1
B_CELL_NAIVE_72
56.3
B_CELL_NAIVE_73
56.1
B_CELL_NAIVE_74
55.8
B_CELL_NAIVE_75
55.7
B_CELL_NAIVE_76
54.9
B_CELL_NAIVE_77
54.8
B_CELL_NAIVE_78
53.7
B_CELL_NAIVE_79
53.2
B_CELL_NAIVE_80
53.2
B_CELL_NAIVE_81
52.6
B_CELL_NAIVE_82
52.6
B_CELL_NAIVE_83
52.6
B_CELL_NAIVE_84
52.6
B_CELL_NAIVE_85
52.2
B_CELL_NAIVE_86
50.4
B_CELL_NAIVE_87
49.9
B_CELL_NAIVE_88
49.0
B_CELL_NAIVE_89
47.0
B_CELL_NAIVE_90
45.9
B_CELL_NAIVE_91
42.3
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