A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
9.9
nTPM
Monaco:
51.8
nTPM
Schmiedel:
49.3
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
9.9
HPA sample
nTPM
Classical monocyte nTPM: 5.2
Samples: 6
Max nTPM: 8.0
Min nTPM: 3.8
P10809_1003
3.8
P10809_1020
4.3
P10809_1039
8.0
P10809_1058
4.3
P10809_1080
5.2
P10809_1107
5.8
Intermediate monocyte nTPM: 4.7
Samples: 6
Max nTPM: 7.1
Min nTPM: 3.0
P10809_1004
3.0
P10809_1023
7.1
P10809_1042
3.9
P10809_1061
5.3
P10809_1081
4.1
P10809_1108
5.0
Non-classical monocyte nTPM: 9.9
Samples: 5
Max nTPM: 24.8
Min nTPM: 3.8
P10809_1005
7.1
P10809_1053
3.8
P10809_1072
24.8
P10809_1082
5.3
P10809_1109
8.3
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
51.8
Monaco sample
nTPM
Classical monocyte nTPM: 51.8
Samples: 4
Max nTPM: 61.8
Min nTPM: 32.5
RHH5313_R3680
32.5
RHH5221_R3593
61.8
RHH5250_R3622
56.8
RHH5279_R3651
55.9
Intermediate monocyte nTPM: 35.7
Samples: 4
Max nTPM: 46.3
Min nTPM: 28.3
RHH5314_R3681
35.5
RHH5222_R3594
28.3
RHH5251_R3623
46.3
RHH5280_R3652
32.8
Non-classical monocyte nTPM: 49.5
Samples: 4
Max nTPM: 55.1
Min nTPM: 36.2
RHH5315_R3682
36.2
RHH5223_R3595
51.6
RHH5252_R3624
55.1
RHH5281_R3653
54.9
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
49.3
Schmiedel sample id
TPM
Classical monocyte TPM: 39.1
Samples: 91
Max TPM: 50.7
Min TPM: 26.6
MONOCYTES_1
50.7
MONOCYTES_2
49.2
MONOCYTES_3
48.5
MONOCYTES_4
48.5
MONOCYTES_5
47.9
MONOCYTES_6
47.6
MONOCYTES_7
47.5
MONOCYTES_8
45.9
MONOCYTES_9
45.4
MONOCYTES_10
45.2
MONOCYTES_11
44.9
MONOCYTES_12
44.4
MONOCYTES_13
44.1
MONOCYTES_14
44.1
MONOCYTES_15
44.0
MONOCYTES_16
44.0
MONOCYTES_17
43.9
MONOCYTES_18
43.4
MONOCYTES_19
43.1
MONOCYTES_20
43.1
MONOCYTES_21
43.0
MONOCYTES_22
43.0
MONOCYTES_23
42.3
MONOCYTES_24
42.2
MONOCYTES_25
42.1
MONOCYTES_26
41.8
MONOCYTES_27
41.8
MONOCYTES_28
41.7
MONOCYTES_29
41.7
MONOCYTES_30
41.6
MONOCYTES_31
40.9
MONOCYTES_32
40.8
MONOCYTES_33
40.7
MONOCYTES_34
40.7
MONOCYTES_35
40.6
MONOCYTES_36
40.6
MONOCYTES_37
40.6
MONOCYTES_38
40.3
MONOCYTES_39
40.2
MONOCYTES_40
39.9
MONOCYTES_41
39.6
MONOCYTES_42
39.5
MONOCYTES_43
39.4
MONOCYTES_44
39.0
MONOCYTES_45
39.0
MONOCYTES_46
38.8
MONOCYTES_47
38.8
MONOCYTES_48
38.7
MONOCYTES_49
38.5
MONOCYTES_50
38.4
MONOCYTES_51
38.4
MONOCYTES_52
38.2
MONOCYTES_53
37.7
MONOCYTES_54
37.6
MONOCYTES_55
37.3
MONOCYTES_56
37.3
MONOCYTES_57
37.1
MONOCYTES_58
36.9
MONOCYTES_59
36.9
MONOCYTES_60
36.4
MONOCYTES_61
36.3
MONOCYTES_62
36.3
MONOCYTES_63
36.1
MONOCYTES_64
36.0
MONOCYTES_65
35.9
MONOCYTES_66
35.7
MONOCYTES_67
35.7
MONOCYTES_68
35.7
MONOCYTES_69
35.3
MONOCYTES_70
35.2
MONOCYTES_71
35.1
MONOCYTES_72
34.8
MONOCYTES_73
34.6
MONOCYTES_74
34.5
MONOCYTES_75
34.3
MONOCYTES_76
34.2
MONOCYTES_77
34.1
MONOCYTES_78
34.1
MONOCYTES_79
33.8
MONOCYTES_80
33.8
MONOCYTES_81
33.7
MONOCYTES_82
33.7
MONOCYTES_83
33.4
MONOCYTES_84
33.2
MONOCYTES_85
33.2
MONOCYTES_86
32.3
MONOCYTES_87
31.6
MONOCYTES_88
30.9
MONOCYTES_89
30.9
MONOCYTES_90
30.6
MONOCYTES_91
26.6
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Non-classical monocyte TPM: 49.3
Samples: 90
Max TPM: 71.0
Min TPM: 34.4
M2_1
71.0
M2_2
68.5
M2_3
67.8
M2_4
65.9
M2_5
65.7
M2_6
64.7
M2_7
63.8
M2_8
63.3
M2_9
63.2
M2_10
60.7
M2_11
60.4
M2_12
59.2
M2_13
58.7
M2_14
57.3
M2_15
57.3
M2_16
55.5
M2_17
54.3
M2_18
54.2
M2_19
53.9
M2_20
53.8
M2_21
53.7
M2_22
53.3
M2_23
52.8
M2_24
52.7
M2_25
52.5
M2_26
52.1
M2_27
51.9
M2_28
51.9
M2_29
51.2
M2_30
51.0
M2_31
51.0
M2_32
50.9
M2_33
50.9
M2_34
50.8
M2_35
50.8
M2_36
50.3
M2_37
50.3
M2_38
50.2
M2_39
49.8
M2_40
49.5
M2_41
49.1
M2_42
49.0
M2_43
48.6
M2_44
48.6
M2_45
48.4
M2_46
48.0
M2_47
47.9
M2_48
47.6
M2_49
47.4
M2_50
47.2
M2_51
47.2
M2_52
46.8
M2_53
46.7
M2_54
46.5
M2_55
46.4
M2_56
46.3
M2_57
46.2
M2_58
46.0
M2_59
45.7
M2_60
45.6
M2_61
45.5
M2_62
45.3
M2_63
45.0
M2_64
44.8
M2_65
44.5
M2_66
44.4
M2_67
44.1
M2_68
44.0
M2_69
43.7
M2_70
43.5
M2_71
43.0
M2_72
42.8
M2_73
42.6
M2_74
42.5
M2_75
41.8
M2_76
41.7
M2_77
41.3
M2_78
41.2
M2_79
41.1
M2_80
41.1
M2_81
40.6
M2_82
40.3
M2_83
39.8
M2_84
39.1
M2_85
38.6
M2_86
38.2
M2_87
38.2
M2_88
37.9
M2_89
37.7
M2_90
34.4
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