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BETA
  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • IMMUNE

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  • VIM
EVOLUTIONARY HIPPOCAMPAL FORMATION Show tissue menu
BRAIN74 EYE4 ENDOCRINE TISSUES5 RESPIRATORY SYSTEM6 PROXIMAL DIGESTIVE TRACT5 GASTROINTESTINAL TRACT11 LIVER & GALLBLADDER4 PANCREAS1 KIDNEY & URINARY BLADDER4 MALE REPRODUCTIVE SYSTEM11 BREAST & FEMALE REPRODUCTIVE SYSTEM10 MUSCLE & VASCULAR TISSUE12 CONNECTIVE & SOFT TISSUE15 SKIN4 BONE MARROW & LYMPHOID TISSUES7
Select an organ to show its tissues
AMYGDALA ANGULAR GYRUS ANNECTANT GYRUS ANTERIOR CINGULATE GYRUS BASAL GANGLIA CAUDATE NUCLEUS CAUDATE PUTAMEN CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS CINGULATE CORTEX CLAUSTRUM CORPUS CALLOSUM CUNEUS DORSAL HIPPOCAMPUS DORSAL ROOT GANGLION DORSAL SPINAL CORD ENTORHINAL CORTEX FRONTAL CORTEX
FUSIFORM GYRUS GENICULATE NUCLEUS GLOBUS PALLIDUS GYRUS RECTUS HABENULA HIPPOCAMPAL FORMATION HYPOTHALAMUS HYPOTHALAMUS, ANTERIOR HYPOTHALAMUS, POSTERIOR INFERIOR FRONTAL GYRUS INFERIOR OCCIPITAL GYRUS INFERIOR TEMPORAL GYRUS INSULAR CORTEX LATERAL THALAMIC NUCLEI MEDULLA OBLONGATA MIDBRAIN MIDDLE FRONTAL GYRUS MIDDLE TEMPORAL GYRUS MOTOR AND PREFRONTAL CORTEX
MOTOR CORTEX OCCIPITAL CORTEX OCCIPITAL GYRUS OLFACTORY BULB ORBITAL GYRUS PERIAQUEDUCTAL GRAY PONS POSTCENTRAL GYRUS POSTERIOR CINGULATE CORTEX POSTERIOR PARAHIPPOCAMPAL GYRUS POSTERIOR THALAMUS PRECENTRAL GYRUS PREFRONTAL CORTEX PREOPTIC AREA PUTAMEN RETROSPLENIAL AND CINGULATE CORTEX RETROSPLENIAL CORTEX SEPTAL AREA SEPTUM
SOMATOSENSORY CORTEX SPINAL CORD SUBICULUM SUBSTANTIA NIGRA SUPERIOR COLLICULI SUPERIOR FRONTAL GYRUS SUPERIOR PARIETAL LOBULE SUPERIOR TEMPORAL GYRUS SUPRAMARGINAL GYRUS TEMPORAL CORTEX THALAMUS VENTRAL FOREBRAIN VENTRAL HIPPOCAMPUS VENTRAL PALLIDUM VENTRAL SPINAL CORD VISUAL CORTEX WHITE MATTER
CORNEA HARDERIAN GLAND LENS RETINA
ADRENAL GLAND PARATHYROID GLAND PINEAL GLAND PITUITARY GLAND THYROID GLAND
BRONCHUS LARYNX LUNG NASOPHARYNX OLFACTORY EPITHELIUM TRACHEA
ESOPHAGUS LIP ORAL MUCOSA SALIVARY GLAND TONGUE
CECUM COLON DUODENUM ILEUM JEJUNUM RECTUM SMALL INTESTINE STOMACH STOMACH (LOWER) STOMACH (MIDDLE) STOMACH (UPPER)
GALLBLADDER LIVER LIVER (LOBE 1) LIVER (LOBE 4)
PANCREAS
KIDNEY KIDNEY (CORTEX) KIDNEY (MEDULLA) URINARY BLADDER
BULBOURETHRAL GLAND DUCTUS DEFERENS EPIDIDYMIS MALE PREPUTIAL GLAND PENIS PROSTATE PROSTATE (ANTERIOR) PROSTATE (VENTRAL) SEMINAL VESICLE TESTIS URETHRAL GLAND
BREAST CERVIX CLITORIS ENDOMETRIUM FALLOPIAN TUBE FEMALE PREPUTIAL GLAND OVARY PLACENTA UTERUS VAGINA
AORTA BLOOD VESSEL DIAPHRAGM HEART ATRIUM HEART MUSCLE HEART VALVE HEART WALL PERIPHERAL VASCULATURE SKELETAL MUSCLE SMOOTH MUSCLE SMOOTH MUSCLE (INTESTINE) SMOOTH MUSCLE (UTERUS)
ABDOMINAL ADIPOSE TISSUE ADIPOSE TISSUE BROWN ADIPOSE TISSUE DURA MATER EAR CANAL EAR CARTILAGE JOINT CARTILAGE MENINGES ORBITAL ADIPOSE TISSUE PERICARDIUM PERITONEUM PLEURA SUBCUTANEOUS ADIPOSE TISSUE SYNOVIAL TISSUE VAGUS NERVE
EYE LID SKIN SKIN (BACK) SKIN (GROIN)
APPENDIX BLOOD, PBMC BONE MARROW LYMPH NODE SPLEEN THYMUS TONSIL
HumanMacaqueMouseRatPig
Protein evolution
Brain
Evolutionary methods
HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Low
Neuronal cells: Not detected
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:299.5 nTPM
HPA Brain:217.8 nTPM
GTEx:299.5 nTPM
FANTOM5:359.7 Scaled Tags Per Million
Macaque:110.5 nTPM
Mouse:35.3 nTPM
Rat:60.3 nTPM
Pig:304.9 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

HIPPOCAMPUS - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA001762Antibody CAB000080Antibody CAB058687
Glial cells LowMediumNot detected
Neuronal cells Not detectedNot detectedNot detected







HIPPOCAMPAL FORMATION - PROTEINTALKS DB MS
Median intensity 278382
Sample Intensity
Hippocampal formation_01
262872
Hippocampal formation_02
199371
Hippocampal formation_03
287828
Hippocampal formation_04
268936
Hippocampal formation_05
294570
Hippocampal formation_06
337078

HIPPOCAMPAL FORMATION - HPA Brain Stereo-seq

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

217.8
Sample id Sample description nTPM
Dentate gyrus
nTPM: 194.6
2010 Male, age 76, both hemispheres 298.3
2530 Female, age 94, left hemisphere 196.5
2528 Male, age 74, both hemispheres 189.8
2531 Female, age 67, both hemispheres 180.4
2246 Female, age 85, both hemispheres 173.8
1927 Female, age 91, both hemispheres 128.8
Entorhinal gyrus
nTPM: 182.2
2117 Female, age 91, right hemisphere 294.3
2686 Male, age 75, right hemisphere 206.0
1787 Male, age 76, left hemisphere 185.1
1938 Female, age 85, left hemisphere 174.6
2613 Female, age 94, left hemisphere 119.3
2764 Male, age 80, right hemisphere 114.0
Hippocampus, CA1
nTPM: 173.6
2082 Female, age 91, right hemisphere 231.1
2527 Male, age 74, both hemispheres 178.9
1873 Female, age 85, both hemispheres 178.2
2045 Male, age 76, both hemispheres 146.5
2749 Male, age 80, left hemisphere 133.3
Hippocampus, CA2
nTPM: 212.5
1940 Female, age 85, left hemisphere 288.9
2249 Male, age 74, both hemispheres 260.0
2113 Female, age 91, right hemisphere 214.5
2437 Female, age 94, left hemisphere 194.2
1963 Male, age 80, left hemisphere 164.5
1892 Male, age 76, both hemispheres 153.1
Hippocampus, CA3
nTPM: 217.8
2436 Male, age 74, both hemispheres 329.7
1867 Male, age 76, both hemispheres 268.8
2861 Female, age 67, both hemispheres 199.0
2137 Male, age 80, left hemisphere 187.7
1891 Female, age 85, both hemispheres 176.1
2620 Female, age 94, left hemisphere 145.4
Parahippocampal cortex
nTPM: 166.6
2018 Male, age 76, both hemispheres 202.7
1990 Female, age 91, right hemisphere 199.4
2250 Female, age 67, right hemisphere 182.7
2245 Female, age 91, both hemispheres 182.4
2622 Female, age 67, right hemisphere 179.8
2692 Male, age 74, both hemispheres 161.0
1933 Female, age 85, both hemispheres 157.7
2532 Female, age 72, left hemisphere 151.9
2693 Female, age 94, both hemispheres 128.4
1850 Male, age 80, both hemispheres 119.8
Perirhinal gyrus
nTPM: 159.8
1841 Female, age 85, right hemisphere 220.7
2521 Female, age 94, right hemisphere 193.1
1794 Male, age 80, right hemisphere 145.0
1847 Female, age 91, left hemisphere 135.1
2848 Male, age 76, right hemisphere 105.1
Subiculum
nTPM: 193.1
2042 Male, age 76, both hemispheres 265.4
2619 Male, age 74, both hemispheres 228.5
2438 Female, age 94, left hemisphere 181.8
2729 Female, age 91, right hemisphere 178.0
1977 Female, age 85, both hemispheres 153.8
1901 Male, age 80, both hemispheres 151.3

HIPPOCAMPAL FORMATION - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

299.5
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 299.5
Samples: 255

Max nTPM: 1152.5
Min nTPM: 40.6
Std nTPM: 166.3
Median nTPM: 265.7
GTEX-13OW5-0011-R1b-SM-5L3GE 60-69 years, male 1152.5
GTEX-13NYS-0011-R1b-SM-5MR55 60-69 years, male 1133.8
GTEX-1PWST-0011-R1b-SM-F2I38 70-79 years, male 1077.8
GTEX-1LKK1-0011-R1b-SM-F2TAF 50-59 years, female 974.8
GTEX-1CB4J-0011-R1a-SM-9WG64 60-69 years, male 863.3
GTEX-12696-0011-R1a-SM-GHWPW 60-69 years, male 820.3
GTEX-OHPN-0011-R1A-SM-2I5GB 60-69 years, female 704.3
GTEX-13OW8-0011-R1a-SM-5L3HI 60-69 years, male 701.7
GTEX-1B996-0011-R1b-SM-7P8PO 60-69 years, male 682.7
GTEX-QVUS-0011-R1A-SM-3GAD2 60-69 years, female 654.0
GTEX-132Q8-0011-R1a-SM-5EGLK 60-69 years, male 653.1
GTEX-13JUV-0011-R1a-SM-5LZY4 40-49 years, female 649.0
GTEX-1LVAO-0011-R1a-SM-F649O 60-69 years, male 600.6
GTEX-1EH9U-0011-R1b-SM-CJI2B 60-69 years, male 588.4
GTEX-1JMQK-0011-R1a-SM-F6484 60-69 years, male 580.0
GTEX-1F6IF-0011-R1b-SM-9WG78 60-69 years, male 572.8
GTEX-1H3VE-0011-R1a-SM-A9G1K 40-49 years, male 555.0
GTEX-15RJE-0011-R1b-SM-H6Q7N 40-49 years, male 535.1
GTEX-11TUW-0011-R1a-SM-DO92S 60-69 years, male 533.7
GTEX-13OVJ-0011-R1b-SM-5L3I6 50-59 years, female 533.2
GTEX-1RNSC-0011-R1b-SM-F342D 60-69 years, male 531.1
GTEX-13N1W-0011-R1b-SM-5MR4T 70-79 years, male 527.0
GTEX-13FHO-0011-R1b-SM-5KLZG 60-69 years, male 523.6
GTEX-NPJ8-0011-R1a-SM-33HCB 40-49 years, male 512.7
GTEX-XMD1-0011-R1A-SM-4AT4C 60-69 years, male 506.7
GTEX-11DYG-0011-R1a-SM-GI4X6 60-69 years, male 489.2
GTEX-1F52S-0011-R1a-SM-9OSX9 60-69 years, female 487.2
GTEX-12ZZX-0011-R1a-SM-5EQ6B 40-49 years, female 482.1
GTEX-1JMPZ-0011-R1b-SM-F6497 30-39 years, male 468.2
GTEX-14PQA-0011-R1b-SM-6EU1G 50-59 years, female 456.7
GTEX-17EVQ-0011-R1a-SM-7189S 70-79 years, male 438.3
GTEX-14E7W-0011-R1b-SM-5YYAT 70-79 years, male 436.3
GTEX-1LVA9-0011-R1b-SM-F2TB5 50-59 years, male 436.3
GTEX-1H1ZS-0011-R1b-SM-A9G1E 70-79 years, male 435.4
GTEX-1JMLX-0011-R1b-SM-G9ERV 50-59 years, male 429.7
GTEX-1GMR8-0011-R1b-SM-CJI2O 50-59 years, female 416.1
GTEX-1F75W-0011-R1a-SM-ARU81 60-69 years, male 415.5
GTEX-1GZHY-0011-R1a-SM-CE6RR 50-59 years, female 408.7
GTEX-1192X-0011-R1b-SM-GI4VU 50-59 years, male 406.0
GTEX-1A3MX-0011-R1b-SM-7P8PH 60-69 years, male 404.7
GTEX-1JN6P-0011-R1b-SM-G8LL3 60-69 years, male 401.5
GTEX-13RTL-0011-R1a-SM-5PNZ8 40-49 years, male 401.3
GTEX-1BAJH-0011-R1a-SM-7P8SV 70-79 years, male 397.4
GTEX-1H1CY-0011-R1a-SM-CKZOZ 60-69 years, female 393.1
GTEX-16XZZ-0011-R1a-SM-7LTAH 60-69 years, male 391.4
GTEX-1OJC4-0011-R1a-SM-F2TAZ 50-59 years, female 391.4
GTEX-1B933-0011-R1b-SM-9QEGW 50-59 years, female 388.4
GTEX-1I1GQ-0011-R1a-SM-CY8GG 50-59 years, male 385.3
GTEX-11TTK-0011-R1b-SM-GIN92 60-69 years, female 381.1
GTEX-11ZVC-0011-R1b-SM-5BC6M 50-59 years, female 380.9
GTEX-13RTJ-0011-R1a-SM-5O9D9 60-69 years, male 380.2
GTEX-131YS-0011-R1a-SM-5DUXC 60-69 years, female 377.9
GTEX-1HSMO-0011-R1a-SM-CM2SV 60-69 years, male 375.8
GTEX-1212Z-0011-R1b-SM-5BC72 60-69 years, male 374.3
GTEX-13NZA-0011-R1b-SM-5LUAF 60-69 years, male 365.7
GTEX-183WM-0011-R1a-SM-718A8 70-79 years, female 364.0
GTEX-1JMQL-0011-R1a-SM-F3K4U 50-59 years, female 363.8
GTEX-1C6VQ-0011-R1a-SM-7P8Q2 50-59 years, male 362.8
GTEX-1E2YA-0011-R1b-SM-CJI29 50-59 years, male 362.3
GTEX-13OVL-0011-R1a-SM-5L3H5 50-59 years, male 362.2
GTEX-13SLW-0011-R1a-SM-5S2W7 70-79 years, male 360.0
GTEX-1R9PO-0011-R1b-SM-F2I2G 60-69 years, female 358.3
GTEX-1399T-0011-R1b-SM-5DUWN 60-69 years, male 357.7
GTEX-RU72-0011-R1A-SM-HAUZG 50-59 years, female 356.8
GTEX-1F48J-0011-R1a-SM-9QEIC 50-59 years, female 354.8
GTEX-1A8G6-0011-R1a-SM-7P8PC 60-69 years, male 351.2
GTEX-13FTY-0011-R1a-SM-5LZXE 40-49 years, female 348.1
GTEX-17JCI-0011-R1b-SM-718A3 60-69 years, female 348.1
GTEX-1NV8Z-0011-R1b-SM-F647K 60-69 years, male 344.2
GTEX-13O3Q-0011-R1b-SM-5KM3L 50-59 years, male 343.6
GTEX-11GSO-0011-R1b-SM-57WD3 60-69 years, male 342.4
GTEX-1KANB-0011-R1a-SM-F3K5M 50-59 years, male 341.4
GTEX-13PDP-0011-R1a-SM-5PNX5 60-69 years, male 340.9
GTEX-12ZZY-0011-R1a-SM-GIN9E 60-69 years, male 334.6
GTEX-13PLJ-0011-R1a-SM-GJ3QF 60-69 years, female 334.1
GTEX-1I1GV-0011-R1a-SM-CL559 60-69 years, male 334.0
GTEX-12ZZZ-0011-R1a-SM-GIN8I 60-69 years, male 333.5
GTEX-1HSKV-0011-R1b-SM-CMKH7 60-69 years, male 330.5
GTEX-139T8-0011-R1a-SM-5HL75 60-69 years, male 327.2
GTEX-1RQED-0011-R1a-SM-F3K5W 60-69 years, male 323.4
GTEX-UTHO-0011-R1A-SM-3GIJO 60-69 years, male 321.5
GTEX-13FHP-0011-R1b-SM-5K7XL 50-59 years, male 317.1
GTEX-ZZPT-0011-R1b-SM-GNINL 50-59 years, male 316.6
GTEX-1C64N-0011-R1b-SM-7P8Q7 50-59 years, male 315.0
GTEX-1IKK5-0011-R1b-SM-CE6SQ 60-69 years, male 314.3
GTEX-1PIIG-0011-R1a-SM-F649P 30-39 years, male 313.6
GTEX-1CAV2-0011-R1a-SM-ARZML 40-49 years, female 313.3
GTEX-1JMOU-0011-R1b-SM-F341B 60-69 years, female 311.6
GTEX-13JVG-0011-R1a-SM-5KM32 60-69 years, male 307.9
GTEX-1J1OQ-0011-R1a-SM-A9G1Z 40-49 years, female 305.5
GTEX-WVLH-0011-R1A-SM-4MVOK 50-59 years, male 304.8
GTEX-1LH75-0011-R1a-SM-F341Y 50-59 years, female 303.9
GTEX-1MJK2-0011-R1b-SM-F649H 50-59 years, male 302.3
GTEX-1HBPI-0011-R1b-SM-A9SKF 50-59 years, male 302.1
GTEX-ZDXO-0011-R1a-SM-4WKF4 60-69 years, male 300.8
GTEX-11EI6-0011-R1a-SM-DO93L 60-69 years, male 298.1
GTEX-15CHQ-0011-R1a-SM-COH27 60-69 years, male 297.9
GTEX-ZYY3-0011-R1b-SM-GPI92 60-69 years, female 297.5
GTEX-13N2G-0011-R1b-SM-5MR3G 60-69 years, male 297.0
GTEX-13G51-0011-R1a-SM-5LZYR 60-69 years, male 294.4
GTEX-1QMI2-0011-R1b-SM-F3K5Q 60-69 years, male 292.4
GTEX-11ZTS-0011-R1a-SM-5BC71 60-69 years, female 291.7
GTEX-1I19N-0011-R1b-SM-GOR1A 70-79 years, male 291.4
GTEX-14C5O-0011-R1b-SM-6AJBW 60-69 years, male 290.4
GTEX-1PPGY-0011-R1b-SM-G8LN3 60-69 years, male 289.1
GTEX-13OW7-0011-R1b-SM-5L3HF 50-59 years, male 287.3
GTEX-14PJO-0011-R1b-SM-6AJAK 60-69 years, male 286.4
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 284.7
GTEX-11ONC-0011-R1a-SM-57WD4 60-69 years, male 282.8
GTEX-1N2EE-0011-R1a-SM-F3K5K 60-69 years, male 280.8
GTEX-ZAK1-0011-R1a-SM-GRR1R 50-59 years, female 280.5
GTEX-17F97-0011-R1b-SM-7IGM9 50-59 years, male 279.2
GTEX-1GN1U-0011-R1a-SM-CJI25 50-59 years, female 277.8
GTEX-X4XX-0011-R1B-SM-3P622 60-69 years, male 277.6
GTEX-14JFF-0011-R1b-SM-G8W88 60-69 years, male 276.9
GTEX-117XS-0011-R1b-SM-GJ3PQ 60-69 years, male 275.4
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 275.3
GTEX-1IOXB-0011-R1a-SM-D4P27 50-59 years, male 275.3
GTEX-1B8L1-0011-R1a-SM-7P8SS 60-69 years, male 275.1
GTEX-1RDX4-0011-R1a-SM-F3K5H 50-59 years, female 274.2
GTEX-1JJEA-0011-R1b-SM-F6495 60-69 years, male 273.4
GTEX-13NZ8-0011-R1b-SM-5KM3V 60-69 years, female 270.5
GTEX-14ASI-0011-R1b-SM-5S2TY 60-69 years, male 270.5
GTEX-14BMV-0011-R1b-SM-G9ERL 50-59 years, male 270.0
GTEX-1I1GS-0011-R1a-SM-CJI43 60-69 years, male 269.9
GTEX-14LZ3-0011-R1a-SM-69LP5 60-69 years, female 269.3
GTEX-13VXU-0011-R1a-SM-GINAT 50-59 years, male 266.2
GTEX-1H3O1-0011-R1b-SM-CL554 60-69 years, male 265.7
GTEX-1H4P4-0011-R1b-SM-CL54V 50-59 years, male 264.8
GTEX-ZAB4-0011-R1a-SM-4RGNO 40-49 years, male 263.2
GTEX-1IY9M-0011-R1a-SM-EXURZ 60-69 years, male 260.7
GTEX-1LB8K-0011-R1b-SM-EZ6MV 50-59 years, male 256.5
GTEX-1C6VR-0011-R1a-SM-7MXUE 60-69 years, male 255.1
GTEX-ZVZQ-0011-R1a-SM-57WBU 60-69 years, female 254.6
GTEX-1ICLZ-0011-R1b-SM-A9SM3 60-69 years, male 254.5
GTEX-1P4AB-0011-R1b-SM-F2TAV 50-59 years, male 251.1
GTEX-1GN73-0011-R1a-SM-CKZNT 60-69 years, male 250.6
GTEX-YJ89-0011-R1a-SM-4RGLS 60-69 years, male 250.6
GTEX-1MCQQ-0011-R1a-SM-F341G 60-69 years, male 250.1
GTEX-13QJC-0011-R1b-SM-5S2UU 60-69 years, female 249.7
GTEX-17EVP-0011-R1a-SM-7DHLA 40-49 years, male 249.6
GTEX-14BIM-0011-R1a-SM-69LQI 60-69 years, female 249.1
GTEX-P44H-0011-R1A-SM-3NM8J 40-49 years, male 247.1
GTEX-13CF2-0011-R1a-SM-5LZY1 60-69 years, male 246.8
GTEX-145LS-0011-R1b-SM-5PNUP 60-69 years, female 246.6
GTEX-1E1VI-0011-R1a-SM-ARZMM 50-59 years, male 245.8
GTEX-1HGF4-0011-R1a-SM-CJI3S 60-69 years, male 245.6
GTEX-S7SE-0011-R1A-SM-2XCDE 50-59 years, male 243.9
GTEX-144GO-0011-R1a-SM-5PNWO 60-69 years, male 243.5
GTEX-11UD1-0011-R1b-SM-5BC7D 40-49 years, female 243.2
GTEX-11H98-0011-R1a-SM-GIN8O 50-59 years, male 243.1
GTEX-11PRG-0011-R1b-SM-H7OHD 50-59 years, male 243.0
GTEX-13S7M-0011-R1b-SM-5PNZE 60-69 years, female 242.9
GTEX-1A32A-0011-R1a-SM-7P8SQ 50-59 years, female 242.0
GTEX-17HG3-0011-R1a-SM-7LG6H 30-39 years, female 241.6
GTEX-1LG7Y-0011-R1a-SM-EYYWV 50-59 years, male 241.2
GTEX-1H1DG-0011-R1b-SM-CKZP1 70-79 years, male 238.5
GTEX-1KWVE-0011-R1a-SM-F649B 30-39 years, male 238.5
GTEX-11GSP-0011-R1a-SM-9QEJ3 60-69 years, female 237.0
GTEX-1GN2E-0011-R1b-SM-CE6RJ 60-69 years, male 236.6
GTEX-1MA7X-0011-R1b-SM-F2TAB 60-69 years, male 233.7
GTEX-15DYW-0011-R1a-SM-H6Q6Q 60-69 years, female 233.3
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 231.3
GTEX-11DXW-0011-R1a-SM-DNZZD 40-49 years, male 230.3
GTEX-1EKGG-0011-R1b-SM-9QEI1 60-69 years, male 229.9
GTEX-15UF6-0011-R1a-SM-9QEGH 70-79 years, female 228.8
GTEX-1O9I2-0011-R1a-SM-F2TAW 50-59 years, male 228.6
GTEX-1CB4G-0011-R1b-SM-9QEHT 60-69 years, male 228.2
GTEX-17HHY-0011-R1a-SM-7189V 50-59 years, male 224.7
GTEX-ZF28-0011-R1a-SM-4WWD1 60-69 years, male 224.1
GTEX-11OF3-0011-R1b-SM-H65ZT 60-69 years, male 222.6
GTEX-WZTO-0011-R1B-SM-3NMAR 40-49 years, male 221.1
GTEX-X585-0011-R1B-SM-46MVE 50-59 years, male 221.1
GTEX-14DAQ-0011-R1a-SM-G8W85 60-69 years, female 220.3
GTEX-ZYFD-0011-R1b-SM-GRR1T 50-59 years, male 218.9
GTEX-1IDJH-0011-R1b-SM-ARU6U 70-79 years, male 216.4
GTEX-13QIC-0011-R1a-SM-5O9CJ 60-69 years, female 215.2
GTEX-17HII-0011-R1b-SM-7MGVW 50-59 years, male 215.1
GTEX-ZUA1-0011-R1a-SM-4YCE2 40-49 years, male 215.0
GTEX-16GPK-0011-R1b-SM-7EWDH 60-69 years, male 213.0
GTEX-15DCD-0011-R1b-SM-6LPIJ 70-79 years, female 211.2
GTEX-1N5O9-0011-R1b-SM-F3K4W 60-69 years, male 209.8
GTEX-13NYB-0011-R1b-SM-5KM4F 40-49 years, male 209.2
GTEX-1I1HK-0011-R1b-SM-CM2T7 60-69 years, male 209.2
GTEX-11DXY-0011-R1b-SM-GI4VQ 60-69 years, male 208.3
GTEX-1F75A-0011-R1b-SM-CE6RA 50-59 years, male 204.2
GTEX-WWYW-0011-R1A-SM-3TW8G 50-59 years, female 203.1
GTEX-1LSNL-0011-R1a-SM-F3K51 50-59 years, male 202.0
GTEX-17MF6-0011-R1a-SM-72D6O 40-49 years, male 201.6
GTEX-N7MT-0011-R1a-SM-CNPO1 60-69 years, female 200.6
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 199.9
GTEX-14E6C-0011-R1a-SM-G8W86 40-49 years, male 199.2
GTEX-11WQC-0011-R1b-SM-DO932 60-69 years, male 198.6
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y 40-49 years, male 189.4
GTEX-13FXS-0011-R1a-SM-5K7U6 50-59 years, male 188.8
GTEX-13X6I-0011-R1b-SM-5PNZC 60-69 years, male 187.3
GTEX-12WSA-0011-R1b-SM-GI4VI 60-69 years, male 186.0
GTEX-14PN4-0011-R1b-SM-69LP8 50-59 years, male 184.8
GTEX-ZAJG-0011-R1a-SM-GQ1CV 50-59 years, female 184.8
GTEX-1GTWX-0011-R1a-SM-CE6RL 60-69 years, male 184.5
GTEX-13FLW-0011-R1b-SM-5LZX2 50-59 years, male 183.8
GTEX-14JIY-0011-R1a-SM-68713 60-69 years, male 182.6
GTEX-1EMGI-0011-R1b-SM-9OSWZ 60-69 years, male 182.5
GTEX-1AX9I-0011-R1b-SM-7RHG2 60-69 years, male 178.1
GTEX-13SLX-0011-R1a-SM-H6Q8N 50-59 years, female 177.1
GTEX-1F6I4-0011-R1a-SM-9OSWU 60-69 years, male 176.5
GTEX-11GS4-0011-R1a-SM-DO129 60-69 years, male 176.3
GTEX-1B8SF-0011-R1b-SM-7P8Q8 60-69 years, male 175.0
GTEX-1LSVX-0011-R1a-SM-F3K5F 60-69 years, male 171.9
GTEX-12WSH-0011-R1a-SM-5GU5V 50-59 years, male 171.2
GTEX-14PJM-0011-R1a-SM-CNPO3 50-59 years, female 170.7
GTEX-13PVQ-0011-R1b-SM-GJ3RQ 50-59 years, male 170.6
GTEX-1GF9W-0011-R1a-SM-9QEIQ 60-69 years, male 169.7
GTEX-11NV4-0011-R1a-SM-GINAK 60-69 years, male 168.9
GTEX-1N2EF-0011-R1a-SM-F2TAT 60-69 years, male 168.9
GTEX-1H23P-0011-R1a-SM-ACKVC 60-69 years, male 168.2
GTEX-1H3NZ-0011-R1a-SM-CKZP5 60-69 years, male 167.4
GTEX-1POEN-0011-R1b-SM-F3K3K 30-39 years, female 167.1
GTEX-145LU-0011-R1a-SM-5Q5CE 50-59 years, male 165.1
GTEX-12WSM-0011-R1a-SM-5LZW6 60-69 years, male 164.7
GTEX-11ZUS-0011-R1a-SM-GI4W7 30-39 years, male 163.3
GTEX-14ABY-0011-R1a-SM-6EU2W 50-59 years, male 158.5
GTEX-1KD4Q-0011-R1a-SM-F3K4Z 40-49 years, male 157.7
GTEX-1EX96-0011-R1a-SM-CE6R5 50-59 years, male 156.3
GTEX-NPJ7-0011-R1a-SM-3GACT 60-69 years, female 153.8
GTEX-1RQEC-0011-R1b-SM-F2I2E 60-69 years, male 153.3
GTEX-14E6D-0011-R1b-SM-5YYAW 50-59 years, male 153.1
GTEX-WL46-0011-R1A-SM-3LK6M 50-59 years, male 152.0
GTEX-1JMQJ-0011-R1b-SM-F2T9P 50-59 years, male 150.8
GTEX-WHSE-0011-R1A-SM-3P5ZK 20-29 years, male 150.4
GTEX-1QP6S-0011-R1b-SM-F3K59 40-49 years, male 149.9
GTEX-13112-0011-R1b-SM-5HL7K 50-59 years, male 144.7
GTEX-13OW6-0011-R1a-SM-5L3HQ 50-59 years, male 144.5
GTEX-Y8DK-0011-R1A-SM-4RGLO 60-69 years, male 142.8
GTEX-15SHU-0011-R1b-SM-H6Q7U 40-49 years, female 141.9
GTEX-12WSD-0011-R1b-SM-5LZVY 60-69 years, female 140.9
GTEX-145MH-0011-R1b-SM-5PNWY 50-59 years, male 137.0
GTEX-Q2AG-0011-R1A-SM-2HMJI 40-49 years, female 134.8
GTEX-15ER7-0011-R1b-SM-7KUE1 20-29 years, female 134.0
GTEX-1313W-0011-R1b-SM-5EQ4A 50-59 years, female 130.5
GTEX-131XH-0011-R1a-SM-5DUWA 50-59 years, male 125.2
GTEX-T6MN-0011-R1A-SM-32QOY 50-59 years, male 119.5
GTEX-1JJ6O-0011-R1b-SM-F2I2M 60-69 years, male 117.8
GTEX-YFC4-0011-R1a-SM-4V6EH 40-49 years, female 117.0
GTEX-16Z82-0011-R1b-SM-7EPHZ 60-69 years, male 116.4
GTEX-139TT-0011-R1a-SM-5LZVD 60-69 years, male 112.2
GTEX-N7MS-0011-R1a-SM-2HMJG 60-69 years, male 109.2
GTEX-12WSF-0011-R1a-SM-5DUVI 70-79 years, male 99.1
GTEX-RNOR-0011-R1A-SM-CNNP5 50-59 years, female 95.6
GTEX-16YQH-0011-R1a-SM-7LT8R 30-39 years, male 94.8
GTEX-12WSE-0011-R1b-SM-5GU4V 20-29 years, male 83.2
GTEX-12126-0011-R1a-SM-GJ3Q8 20-29 years, male 78.3
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 59.6
GTEX-1R9K4-0011-R1a-SM-F342F 60-69 years, male 53.3
GTEX-15EO6-0011-R1b-SM-H7OGP 50-59 years, male 40.6
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

359.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 359.7
FF:10153-102I9 76 years, female 530.3
FF:10169-103B7 60 years, female 189.0

HIPPOCAMPAL FORMATION - Macaque RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

110.5
Macaque sample Sample description nTPM
Subiculum
nTPM: 41.7
Samples: 1

Max nTPM: 41.7
Min nTPM: 41.7
Sample A 41.7
Entorhinal cortex
nTPM: 110.6
Samples: 2

Max nTPM: 174.0
Min nTPM: 47.1
Sample A 47.1
Sample B 174.0
Hippocampal formation
nTPM: 55.0
Samples: 4

Max nTPM: 58.9
Min nTPM: 47.7
Sample A 58.9
Sample B 47.7
Sample C 58.5
Sample D 54.8

HIPPOCAMPAL FORMATION - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

304.9
Pig sample Sample description nTPM
Subiculum
nTPM: 304.3
Samples: 4

Max nTPM: 399.5
Min nTPM: 225.0
Sample A Female 291.4
Sample B Female 225.0
Sample C Male 301.4
Sample D Male 399.5
Dorsal hippocampus
nTPM: 267.6
Samples: 4

Max nTPM: 355.8
Min nTPM: 144.4
Sample A Female 333.4
Sample B Female 236.7
Sample C Male 355.8
Sample D Male 144.4
Entorhinal cortex
nTPM: 227.5
Samples: 4

Max nTPM: 337.1
Min nTPM: 97.8
Sample A Female 337.1
Sample B Female 224.3
Sample C Male 250.8
Sample D Male 97.8
Ventral hippocampus
nTPM: 305.0
Samples: 4

Max nTPM: 499.4
Min nTPM: 204.8
Sample A Female 268.0
Sample B Female 204.8
Sample C Male 499.4
Sample D Male 247.6

HIPPOCAMPAL FORMATION - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

35.3
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 29.8
Samples: 4

Max nTPM: 34.2
Min nTPM: 25.5
Sample A 32.1
Sample B 25.5
Sample C 34.2
Sample D 27.4
Hippocampal formation
nTPM: 35.3
Samples: 4

Max nTPM: 38.4
Min nTPM: 32.8
Sample A 32.9
Sample B 32.8
Sample C 38.4
Sample D 37.1

HIPPOCAMPAL FORMATION - Rat RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

60.3
Rat sample Sample description nTPM
Entorhinal cortex
nTPM: 60.3
Samples: 4

Max nTPM: 91.1
Min nTPM: 37.1
Sample A 59.7
Sample A 37.1
Sample A 91.1
Sample B 53.2
Ventral hippocampus
nTPM: 36.1
Samples: 4

Max nTPM: 46.5
Min nTPM: 22.9
Sample A 31.2
Sample A 22.9
Sample A 46.5
Sample A 43.6

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