A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
176.8
nTPM
Monaco:
1865.6
nTPM
Schmiedel:
72.9
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
176.8
HPA sample
nTPM
Memory B-cell nTPM: 176.8
Samples: 6
Max nTPM: 304.8
Min nTPM: 69.8
P10809_1017
304.8
P10809_1025
203.9
P10809_1044
69.8
P10809_1063
160.5
P10809_1092
179.8
P10809_1105
142.2
Naive B-cell nTPM: 118.1
Samples: 6
Max nTPM: 211.2
Min nTPM: 83.0
P10809_1011
99.2
P10809_1029
110.4
P10809_1048
211.2
P10809_1067
88.2
P10809_1091
116.5
P10809_1104
83.0
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
1865.6
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 642.8
Samples: 4
Max nTPM: 857.9
Min nTPM: 304.6
RHH5310_R3677
846.5
RHH5218_R3590
857.9
RHH5247_R3619
304.6
RHH5276_R3648
562.3
Naive B-cell nTPM: 352.8
Samples: 4
Max nTPM: 553.7
Min nTPM: 184.5
RHH5308_R3675
368.2
RHH5216_R3588
553.7
RHH5245_R3617
184.5
RHH5274_R3646
304.7
Non-switched memory B-cell nTPM: 486.9
Samples: 4
Max nTPM: 613.7
Min nTPM: 355.8
RHH5309_R3676
534.3
RHH5217_R3589
613.7
RHH5246_R3618
355.8
RHH5275_R3647
443.6
Plasmablast nTPM: 1865.6
Samples: 4
Max nTPM: 2534.9
Min nTPM: 1391.9
RHH5312_R3679
2534.9
RHH5220_R3592
1919.3
RHH5249_R3621
1616.4
RHH5278_R3650
1391.9
Switched memory B-cell nTPM: 702.2
Samples: 4
Max nTPM: 824.6
Min nTPM: 580.0
RHH5311_R3678
580.0
RHH5219_R3591
824.6
RHH5248_R3620
799.3
RHH5277_R3649
604.8
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
72.9
Schmiedel sample id
TPM
Naive B-cell TPM: 72.9
Samples: 91
Max TPM: 145.4
Min TPM: 37.0
B_CELL_NAIVE_1
145.4
B_CELL_NAIVE_2
133.3
B_CELL_NAIVE_3
131.2
B_CELL_NAIVE_4
126.1
B_CELL_NAIVE_5
119.8
B_CELL_NAIVE_6
111.3
B_CELL_NAIVE_7
103.5
B_CELL_NAIVE_8
102.5
B_CELL_NAIVE_9
102.2
B_CELL_NAIVE_10
96.6
B_CELL_NAIVE_11
92.9
B_CELL_NAIVE_12
92.2
B_CELL_NAIVE_13
91.1
B_CELL_NAIVE_14
89.5
B_CELL_NAIVE_15
87.1
B_CELL_NAIVE_16
86.5
B_CELL_NAIVE_17
86.3
B_CELL_NAIVE_18
85.7
B_CELL_NAIVE_19
84.6
B_CELL_NAIVE_20
84.0
B_CELL_NAIVE_21
84.0
B_CELL_NAIVE_22
83.3
B_CELL_NAIVE_23
82.0
B_CELL_NAIVE_24
81.0
B_CELL_NAIVE_25
80.4
B_CELL_NAIVE_26
79.7
B_CELL_NAIVE_27
77.8
B_CELL_NAIVE_28
77.5
B_CELL_NAIVE_29
77.3
B_CELL_NAIVE_30
76.9
B_CELL_NAIVE_31
76.0
B_CELL_NAIVE_32
75.2
B_CELL_NAIVE_33
75.2
B_CELL_NAIVE_34
74.9
B_CELL_NAIVE_35
74.4
B_CELL_NAIVE_36
73.8
B_CELL_NAIVE_37
73.6
B_CELL_NAIVE_38
73.3
B_CELL_NAIVE_39
72.8
B_CELL_NAIVE_40
72.7
B_CELL_NAIVE_41
72.5
B_CELL_NAIVE_42
71.9
B_CELL_NAIVE_43
70.3
B_CELL_NAIVE_44
70.1
B_CELL_NAIVE_45
70.1
B_CELL_NAIVE_46
70.0
B_CELL_NAIVE_47
67.6
B_CELL_NAIVE_48
67.5
B_CELL_NAIVE_49
66.6
B_CELL_NAIVE_50
66.4
B_CELL_NAIVE_51
66.3
B_CELL_NAIVE_52
66.3
B_CELL_NAIVE_53
66.2
B_CELL_NAIVE_54
65.8
B_CELL_NAIVE_55
64.9
B_CELL_NAIVE_56
64.4
B_CELL_NAIVE_57
64.4
B_CELL_NAIVE_58
64.4
B_CELL_NAIVE_59
64.3
B_CELL_NAIVE_60
64.2
B_CELL_NAIVE_61
63.8
B_CELL_NAIVE_62
63.4
B_CELL_NAIVE_63
63.0
B_CELL_NAIVE_64
62.4
B_CELL_NAIVE_65
62.3
B_CELL_NAIVE_66
62.0
B_CELL_NAIVE_67
61.6
B_CELL_NAIVE_68
60.8
B_CELL_NAIVE_69
60.8
B_CELL_NAIVE_70
60.4
B_CELL_NAIVE_71
59.7
B_CELL_NAIVE_72
59.5
B_CELL_NAIVE_73
57.7
B_CELL_NAIVE_74
56.8
B_CELL_NAIVE_75
55.9
B_CELL_NAIVE_76
55.6
B_CELL_NAIVE_77
54.4
B_CELL_NAIVE_78
53.9
B_CELL_NAIVE_79
53.7
B_CELL_NAIVE_80
52.2
B_CELL_NAIVE_81
52.2
B_CELL_NAIVE_82
51.7
B_CELL_NAIVE_83
51.1
B_CELL_NAIVE_84
50.2
B_CELL_NAIVE_85
50.0
B_CELL_NAIVE_86
47.4
B_CELL_NAIVE_87
46.9
B_CELL_NAIVE_88
45.3
B_CELL_NAIVE_89
44.4
B_CELL_NAIVE_90
37.5
B_CELL_NAIVE_91
37.0
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