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  • TISSUE

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TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
Tissue methods
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Medium
Neuronal cells: Not detected
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

GTEx:512.0 nTPM
FANTOM5:425.4 Scaled Tags Per Million
Pig:191.2 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA001762Antibody CAB000080Antibody CAB058687
Glial cells MediumMediumMedium
Neuronal cells LowNot detectedLow







CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

512.0
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 512.0
Samples: 300

Max nTPM: 4513.4
Min nTPM: 32.4
Std nTPM: 361.3
Median nTPM: 435.8
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 4513.4
GTEX-1CB4J-0011-R5a-SM-9WG5Y 60-69 years, male 1806.4
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 1647.8
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 1627.3
GTEX-1PWST-0011-R5a-SM-F648V 70-79 years, male 1611.4
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 1593.2
GTEX-15DDE-0011-R5b-SM-7KULJ 50-59 years, female 1531.5
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 1369.7
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 1324.7
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 1308.2
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 1195.7
GTEX-13N2G-0011-R5a-SM-5MR33 60-69 years, male 1193.0
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 1107.9
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 1102.6
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 1054.3
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 990.2
GTEX-1JMQL-0011-R5a-SM-F3424 50-59 years, female 977.2
GTEX-1LVA9-0011-R5a-SM-F6492 50-59 years, male 948.9
GTEX-11TUW-0011-R5b-SM-5BC6Q 60-69 years, male 937.9
GTEX-1RLM8-0011-R5a-SM-F3K4P 50-59 years, male 933.1
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 882.8
GTEX-WHSE-0011-R5A-SM-3P5ZO 20-29 years, male 881.7
GTEX-1LH75-0011-R5b-SM-F2TAO 50-59 years, female 876.9
GTEX-14E6C-0011-R5b-SM-G9ERG 40-49 years, male 871.6
GTEX-1LB8K-0011-R5b-SM-G8OKO 50-59 years, male 864.2
GTEX-1QEPI-0011-R5b-SM-F649S 60-69 years, female 841.6
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 840.9
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 832.3
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 823.3
GTEX-1NV5F-0011-R5b-SM-F3K3I 60-69 years, female 819.0
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 814.6
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 812.5
GTEX-11EI6-0011-R5a-SM-GINAM 60-69 years, male 811.5
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 810.3
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 806.8
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 803.1
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 790.1
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 788.7
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 771.3
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 769.9
GTEX-1RAZS-0011-R5b-SM-F341U 50-59 years, male 756.4
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 755.3
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 749.9
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 748.6
GTEX-1QP6S-0011-R5a-SM-F648S 40-49 years, male 747.4
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 746.8
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 745.5
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 737.1
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 723.8
GTEX-1A8G7-0011-R5a-SM-H7OH3 60-69 years, male 721.9
GTEX-1O9I2-0011-R5a-SM-F648P 50-59 years, male 718.8
GTEX-13QJC-0011-R5a-SM-GJ3QH 60-69 years, female 714.7
GTEX-1POEN-0011-R5b-SM-F2T9Z 30-39 years, female 702.3
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 697.4
GTEX-1JMQK-0011-R5a-SM-G8LKV 60-69 years, male 688.9
GTEX-1N5O9-0011-R5a-SM-F3K46 60-69 years, male 678.0
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 677.3
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 676.3
GTEX-1KWVE-0011-R5a-SM-G8LLB 30-39 years, male 673.7
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 665.7
GTEX-15UF6-0011-R5a-SM-H7OFA 70-79 years, female 661.8
GTEX-1MA7X-0011-R5a-SM-F341K 60-69 years, male 656.1
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 652.7
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 651.2
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 646.7
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 640.5
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 640.1
GTEX-ZZPT-0011-R5a-SM-GPRX5 50-59 years, male 629.2
GTEX-1NV8Z-0011-R5a-SM-G8LKX 60-69 years, male 617.9
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 617.6
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 615.0
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 613.5
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 611.8
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 607.3
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 605.7
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 603.5
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 602.3
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 598.1
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 594.6
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 594.4
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 593.3
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 590.7
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 590.3
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 588.2
GTEX-1LKK1-0011-R5b-SM-EY5YB 50-59 years, female 586.8
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 580.6
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 580.5
GTEX-ZYY3-0011-R5a-SM-H7OGH 60-69 years, female 579.5
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 579.1
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 576.0
GTEX-1MCQQ-0011-R5b-SM-GJ3RW 60-69 years, male 563.3
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 560.0
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 557.5
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 551.3
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 550.4
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 549.9
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 549.5
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 548.9
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 548.6
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 547.1
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 540.7
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 539.5
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 538.4
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 537.6
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 535.5
GTEX-1117F-0011-R5a-SM-GI4VW 60-69 years, female 534.2
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 525.2
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 522.2
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 515.6
GTEX-12584-0011-R5b-SM-GIN96 40-49 years, male 515.4
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 514.6
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 513.4
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 512.8
GTEX-1PPGY-0011-R5a-SM-F33ZV 60-69 years, male 509.3
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 508.9
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 503.5
GTEX-1RQED-0011-R5b-SM-F3K56 60-69 years, male 502.9
GTEX-1PIIG-0011-R5b-SM-F341S 30-39 years, male 500.6
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 500.5
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 500.0
GTEX-16GPK-0011-R5b-SM-GRR3C 60-69 years, male 500.0
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 499.4
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 497.6
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 495.8
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 492.7
GTEX-1N2EE-0011-R5a-SM-EY5YF 60-69 years, male 485.0
GTEX-1LSNL-0011-R5a-SM-F3K49 50-59 years, male 484.9
GTEX-1RDX4-0011-R5a-SM-F33ZH 50-59 years, female 483.4
GTEX-1MJK2-0011-R5b-SM-F3427 50-59 years, male 482.9
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 481.3
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 480.5
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 479.7
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 477.7
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 473.2
GTEX-11ZU8-0011-R5a-SM-GJ3PY 60-69 years, male 471.2
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 468.7
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 467.9
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 467.4
GTEX-15RJE-0011-R5b-SM-H6Q7T 40-49 years, male 466.9
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 465.7
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 463.5
GTEX-1JMOU-0011-R5b-SM-EY5ZM 60-69 years, female 458.7
GTEX-14C5O-0011-R5a-SM-G8W84 60-69 years, male 458.4
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 457.2
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 455.4
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 452.2
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 446.6
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 443.7
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 441.7
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 439.4
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 432.3
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 430.6
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 429.6
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 428.8
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 428.2
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 421.4
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 421.0
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 417.6
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 416.9
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 416.6
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 416.1
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 413.1
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 408.0
GTEX-117XS-0011-R5b-SM-GJ3PP 60-69 years, male 405.8
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 403.2
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 401.9
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 400.9
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 400.4
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 400.1
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 392.9
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 391.6
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 387.5
GTEX-1RQEC-0011-R5a-SM-F2TBK 60-69 years, male 386.0
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 385.8
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 382.4
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 381.5
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 380.8
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 379.8
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 378.1
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 377.4
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 376.5
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 376.3
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 375.6
GTEX-11EMC-0011-R5a-SM-GJ3PK 60-69 years, female 371.1
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 370.9
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 369.8
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 365.1
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 362.9
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 359.7
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 358.9
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 358.4
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 357.1
GTEX-1LSVX-0011-R3a-SM-EXURQ 60-69 years, male 352.6
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 352.2
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 351.9
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 351.0
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 349.2
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 348.4
GTEX-1R46S-0011-R5b-SM-F342A 60-69 years, female 345.8
GTEX-1KD4Q-0011-R5a-SM-EY5Y8 40-49 years, male 342.6
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 340.5
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 340.1
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 340.0
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 338.5
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 338.1
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 336.2
GTEX-ZYFD-0011-R5a-SM-H6Q7M 50-59 years, male 334.8
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 334.2
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 333.4
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 333.0
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 331.8
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 331.8
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 330.4
GTEX-1JMLX-0011-R5b-SM-EY5YK 50-59 years, male 326.5
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 322.3
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 319.9
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 319.8
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 315.4
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 313.8
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 313.6
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 313.4
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 311.0
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 310.5
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 309.0
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 304.4
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 303.9
GTEX-ZAK1-0011-R5a-SM-GRR32 50-59 years, female 303.9
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 303.5
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 301.3
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 300.7
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 298.6
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 297.9
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 296.4
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 294.5
GTEX-1JN6P-0011-R5b-SM-G9EPO 60-69 years, male 292.8
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 292.1
GTEX-11GSO-0011-R5b-SM-GJ3RA 60-69 years, male 291.9
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 288.0
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 288.0
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 286.0
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 285.3
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 281.6
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 281.0
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 280.0
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 279.6
GTEX-111FC-0011-R5a-SM-GIN8L 60-69 years, male 277.3
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 277.3
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 274.3
GTEX-1LVAO-0011-R5a-SM-EY5Y6 60-69 years, male 270.4
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 269.7
GTEX-ZAJG-0011-R5a-SM-GRR1S 50-59 years, female 269.5
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 266.0
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 263.9
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 263.5
GTEX-1OJC4-0011-R5b-SM-F3K55 50-59 years, female 262.7
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 262.6
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 262.5
GTEX-11GS4-0011-R5a-SM-GINAF 60-69 years, male 262.2
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 261.8
GTEX-1QMI2-0011-R5b-SM-F3K4S 60-69 years, male 260.7
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 260.4
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 260.3
GTEX-UTHO-0011-R5A-SM-G8W6H 60-69 years, male 259.1
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 256.8
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 253.4
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 252.4
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 250.7
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 248.6
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 247.5
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 247.0
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 238.8
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 231.4
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 229.2
GTEX-1N2EF-0011-R5a-SM-F3K4Y 60-69 years, male 227.8
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 224.8
GTEX-1192W-0011-R5a-SM-GI4VY 60-69 years, male 223.6
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 220.9
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 220.2
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 219.7
GTEX-1P4AB-0011-R5a-SM-F3K4I 50-59 years, male 218.6
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 218.2
GTEX-12126-0011-R5b-SM-GIN98 20-29 years, male 217.5
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 212.7
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 208.4
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 208.2
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 208.0
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 207.9
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 200.1
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 198.5
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 197.7
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 189.6
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 184.7
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 183.6
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 180.8
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 164.0
GTEX-1ICLZ-0011-R5a-SM-CMKHM 60-69 years, male 162.6
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 162.4
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 105.5
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 98.1
GTEX-11ZUS-0011-R5b-SM-GIN9I 30-39 years, male 32.4
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

425.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 425.4
FF:10164-103B2 76 years, female 425.4

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

191.2
Pig sample Sample description nTPM
Caudate
nTPM: 191.2
Samples: 4

Max nTPM: 235.3
Min nTPM: 141.1
Sample A Female 168.7
Sample B Female 219.7
Sample C Male 235.3
Sample D Male 141.1

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