MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:22.2 nTPM
HPA Brain:68.8 nTPM
GTEx:22.2 nTPM
FANTOM5:181.3 Scaled Tags Per Million
Pig:127.1 nTPM
Mouse:64.6 nTPM
Allen mouse:7.0 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 68.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 54.8
1830 Male, age 51, unknown 76.0
2411 Female, age 72, unknown 73.8
1833 Male, age 53, unknown 70.2
2019 Male, age 18, unknown 60.6
1870 Female, age 42, unknown 56.0
2219 Male, age 76, both hemispheres 46.6
2666 Male, age 74, left hemisphere 44.1
2828 Female, age 72, unknown 43.6
1827 Male, age 72, unknown 40.1
2586 Male, age 75, left hemisphere 37.0
Dorsal raphe nucleus
nTPM: 51.3
2750 Male, age 76, both hemispheres 91.3
2047 Male, age 72, unknown 48.3
1828 Male, age 53, unknown 42.7
2016 Female, age 72, unknown 41.5
2298 Female, age 72, unknown 32.6
Inferior colliculus
nTPM: 38.8
1890 Male, age 53, unknown 47.1
2849 Male, age 72, unknown 40.4
1848 Female, age 42, unknown 36.8
2097 Female, age 72, unknown 31.0
Median raphe nucleus
nTPM: 68.8
2220 Male, age 76, midline 68.8
Periaquaductal grey, anterior
nTPM: 40.2
2502 Female, age 75, unknown 44.8
1947 Male, age 18, unknown 43.0
1795 Male, age 51, unknown 32.7
Periaquaductal grey, dorsal
nTPM: 33.4
2464 Female, age 72, unknown 46.9
1831 Male, age 72, unknown 31.3
2850 Male, age 76, both hemispheres 30.2
1840 Male, age 53, unknown 25.3
Periaquaductal grey, lateral
nTPM: 37.5
2272 Male, age 74, both hemispheres 41.9
2053 Male, age 18, unknown 40.5
2140 Male, age 76, both hemispheres 29.9
Pretectal area
nTPM: 36.5
2407 Male, age 75, both hemispheres 50.4
2316 Male, age 76, right hemisphere 49.3
2825 Male, age 18, unknown 43.3
2273 Male, age 74, both hemispheres 41.4
1815 Male, age 53, unknown 39.7
2224 Female, age 72, unknown 36.0
2007 Male, age 72, unknown 33.3
2667 Female, age 75, unknown 31.3
1817 Female, age 42, unknown 28.8
1944 Female, age 72, unknown 25.5
1816 Male, age 51, unknown 22.6
Red nucleus
nTPM: 68.5
1904 Male, age 53, unknown 83.7
1865 Male, age 51, unknown 82.9
2823 Male, age 76, right hemisphere 80.8
2588 Male, age 74, left hemisphere 78.5
2227 Male, age 72, unknown 73.3
2769 Male, age 72, unknown 73.1
2503 Female, age 72, unknown 69.7
2584 Male, age 75, left hemisphere 65.2
1821 Female, age 72, unknown 63.0
1954 Female, age 42, unknown 58.2
2785 Male, age 18, unknown 55.8
2725 Female, age 75, unknown 38.4
Substantia nigra
nTPM: 48.8
2409 Female, age 72, unknown 61.8
2583 Male, age 75, right hemisphere 61.7
2590 Female, age 75, unknown 60.1
1851 Male, age 51, unknown 54.1
2241 Male, age 72, unknown 51.3
2699 Male, age 18, unknown 45.3
1916 Female, age 42, unknown 43.3
1941 Male, age 53, unknown 42.6
1889 Female, age 72, unknown 39.9
2665 Male, age 74, both hemispheres 27.6
Superior colliculus
nTPM: 44.1
2668 Female, age 75, unknown 60.0
1913 Female, age 42, unknown 54.7
2587 Male, age 74, left hemisphere 50.7
1895 Male, age 76, right hemisphere 49.8
1995 Male, age 72, unknown 46.6
1839 Male, age 51, unknown 44.2
1796 Male, age 53, unknown 36.3
2664 Male, age 75, both hemispheres 34.8
2261 Male, age 18, unknown 33.1
2087 Female, age 72, unknown 30.8
Ventral tegmental area
nTPM: 58.8
2223 Female, age 72, unknown 88.2
2410 Female, age 72, unknown 63.5
2218 Male, age 76, both hemispheres 58.6
1942 Male, age 51, unknown 52.4
2021 Male, age 53, unknown 48.2
1915 Female, age 42, unknown 42.0

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 22.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 22.2
Samples: 183

Max nTPM: 85.0
Min nTPM: 3.6
Std nTPM: 12.0
Median nTPM: 21.0
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 85.0
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 80.9
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 57.4
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 53.6
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 48.1
GTEX-1R9K4-0011-R2b-SM-G8LLF 60-69 years, male 47.0
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 46.4
GTEX-ZAK1-0011-R2a-SM-GPRX1 50-59 years, female 46.2
GTEX-16GPK-0011-R2a-SM-GRR1F 60-69 years, male 45.0
GTEX-1LKK1-0011-R2b-SM-G8OLT 50-59 years, female 44.7
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 44.4
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 181.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 181.3
FF:10158-103A5 76 years, female 181.3

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 127.1
Pig sample Sample description nTPM
Substantia nigra
nTPM: 90.3
Samples: 4

Max nTPM: 128.0
Min nTPM: 43.5
Sample A Female 109.8
Sample B Female 43.5
Sample C Male 79.8
Sample D Male 128.0
Midbrain
nTPM: 127.1
Samples: 4

Max nTPM: 332.7
Min nTPM: 49.9
Sample A Female 332.7
Sample B Female 70.4
Sample C Male 55.3
Sample D Male 49.9
Periaqueductal gray
nTPM: 52.2
Samples: 3

Max nTPM: 56.1
Min nTPM: 44.3
Sample B Female 56.1
Sample C Male 44.3
Sample D Male 56.1
Superior colliculi
nTPM: 69.3
Samples: 4

Max nTPM: 83.7
Min nTPM: 37.1
Sample A Female 83.0
Sample B Female 37.1
Sample C Male 73.3
Sample D Male 83.7

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 64.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 64.6
Samples: 4

Max nTPM: 69.7
Min nTPM: 59.5
Sample A Male 62.3
Sample B Male 59.5
Sample C Female 66.9
Sample D Female 69.7

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 7.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 7.0
73718048 Antisense, RP_051121_04_C02, Mouse strain C57BL/6J (56 days, male) 7.2
69549632 Antisense, RP_050303_02_G08, Mouse strain C57BL/6J (56 days, male) 6.9

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