A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
55.6
nTPM
Monaco:
604.4
nTPM
Schmiedel:
368.6
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
55.6
HPA sample
nTPM
NK-cell nTPM: 55.6
Samples: 6
Max nTPM: 94.8
Min nTPM: 30.7
P10809_1013
79.6
P10809_1033
40.7
P10809_1052
42.5
P10809_1071
30.7
P10809_1093
94.8
P10809_1103
45.1
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
604.4
Monaco sample
nTPM
NK-cell nTPM: 604.4
Samples: 4
Max nTPM: 700.2
Min nTPM: 508.8
RHH5316_R3683
609.7
RHH5224_R3596
700.2
RHH5253_R3625
598.9
RHH5282_R3654
508.8
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
368.6
Schmiedel sample id
TPM
NK-cell TPM: 368.6
Samples: 90
Max TPM: 516.4
Min TPM: 231.5
NK_1
516.4
NK_2
508.9
NK_3
508.4
NK_4
496.4
NK_5
487.8
NK_6
474.6
NK_7
460.3
NK_8
457.4
NK_9
455.2
NK_10
454.5
NK_11
440.9
NK_12
440.2
NK_13
433.2
NK_14
428.9
NK_15
424.3
NK_16
420.9
NK_17
412.5
NK_18
409.4
NK_19
404.5
NK_20
400.7
NK_21
400.6
NK_22
400.0
NK_23
397.4
NK_24
397.4
NK_25
396.1
NK_26
394.5
NK_27
392.9
NK_28
392.3
NK_29
389.9
NK_30
386.0
NK_31
383.9
NK_32
382.8
NK_33
381.7
NK_34
378.1
NK_35
378.0
NK_36
376.6
NK_37
373.7
NK_38
372.1
NK_39
371.0
NK_40
369.0
NK_41
368.8
NK_42
367.0
NK_43
366.9
NK_44
365.4
NK_45
364.5
NK_46
364.0
NK_47
363.7
NK_48
362.5
NK_49
362.0
NK_50
358.6
NK_51
358.4
NK_52
358.2
NK_53
357.8
NK_54
354.5
NK_55
350.9
NK_56
347.2
NK_57
346.9
NK_58
346.0
NK_59
343.3
NK_60
343.0
NK_61
336.9
NK_62
335.0
NK_63
334.3
NK_64
334.2
NK_65
334.1
NK_66
333.9
NK_67
333.2
NK_68
332.8
NK_69
332.5
NK_70
331.1
NK_71
329.6
NK_72
326.1
NK_73
324.0
NK_74
320.9
NK_75
319.5
NK_76
319.2
NK_77
317.9
NK_78
309.0
NK_79
304.2
NK_80
304.0
NK_81
301.3
NK_82
299.8
NK_83
299.3
NK_84
283.9
NK_85
276.5
NK_86
276.2
NK_87
273.9
NK_88
270.1
NK_89
250.2
NK_90
231.5
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