A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
53.5
nTPM
Monaco:
250.3
nTPM
Schmiedel:
79.9
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
53.5
HPA sample
nTPM
Classical monocyte nTPM: 5.1
Samples: 6
Max nTPM: 9.3
Min nTPM: 3.1
P10809_1003
5.3
P10809_1020
4.1
P10809_1039
5.3
P10809_1058
3.1
P10809_1080
9.3
P10809_1107
3.5
Intermediate monocyte nTPM: 34.9
Samples: 6
Max nTPM: 58.5
Min nTPM: 21.0
P10809_1004
58.5
P10809_1023
21.8
P10809_1042
36.3
P10809_1061
45.3
P10809_1081
26.3
P10809_1108
21.0
Non-classical monocyte nTPM: 53.6
Samples: 5
Max nTPM: 118.7
Min nTPM: 31.6
P10809_1005
45.3
P10809_1053
39.4
P10809_1072
118.7
P10809_1082
32.8
P10809_1109
31.6
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
250.3
Monaco sample
nTPM
Classical monocyte nTPM: 42.0
Samples: 4
Max nTPM: 87.1
Min nTPM: 23.5
RHH5313_R3680
23.5
RHH5221_R3593
87.1
RHH5250_R3622
32.4
RHH5279_R3651
24.8
Intermediate monocyte nTPM: 209.0
Samples: 4
Max nTPM: 385.0
Min nTPM: 144.5
RHH5314_R3681
144.5
RHH5222_R3594
385.0
RHH5251_R3623
153.4
RHH5280_R3652
153.0
Non-classical monocyte nTPM: 250.3
Samples: 4
Max nTPM: 501.1
Min nTPM: 121.7
RHH5315_R3682
158.8
RHH5223_R3595
501.1
RHH5252_R3624
121.7
RHH5281_R3653
219.5
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
79.9
Schmiedel sample id
TPM
Classical monocyte TPM: 6.4
Samples: 91
Max TPM: 17.3
Min TPM: 1.8
MONOCYTES_1
17.3
MONOCYTES_2
14.7
MONOCYTES_3
12.6
MONOCYTES_4
12.0
MONOCYTES_5
11.8
MONOCYTES_6
11.7
MONOCYTES_7
11.6
MONOCYTES_8
10.9
MONOCYTES_9
10.9
MONOCYTES_10
10.1
MONOCYTES_11
9.4
MONOCYTES_12
9.3
MONOCYTES_13
8.9
MONOCYTES_14
8.7
MONOCYTES_15
8.4
MONOCYTES_16
8.3
MONOCYTES_17
7.7
MONOCYTES_18
7.6
MONOCYTES_19
7.6
MONOCYTES_20
7.6
MONOCYTES_21
7.6
MONOCYTES_22
7.5
MONOCYTES_23
7.4
MONOCYTES_24
7.4
MONOCYTES_25
7.3
MONOCYTES_26
7.2
MONOCYTES_27
7.2
MONOCYTES_28
7.2
MONOCYTES_29
7.2
MONOCYTES_30
7.0
MONOCYTES_31
6.9
MONOCYTES_32
6.8
MONOCYTES_33
6.7
MONOCYTES_34
6.6
MONOCYTES_35
6.5
MONOCYTES_36
6.5
MONOCYTES_37
6.4
MONOCYTES_38
6.4
MONOCYTES_39
6.4
MONOCYTES_40
6.4
MONOCYTES_41
6.4
MONOCYTES_42
6.3
MONOCYTES_43
6.3
MONOCYTES_44
6.2
MONOCYTES_45
6.1
MONOCYTES_46
5.9
MONOCYTES_47
5.9
MONOCYTES_48
5.8
MONOCYTES_49
5.8
MONOCYTES_50
5.8
MONOCYTES_51
5.7
MONOCYTES_52
5.6
MONOCYTES_53
5.6
MONOCYTES_54
5.5
MONOCYTES_55
5.5
MONOCYTES_56
5.5
MONOCYTES_57
5.4
MONOCYTES_58
5.4
MONOCYTES_59
5.3
MONOCYTES_60
5.3
MONOCYTES_61
5.3
MONOCYTES_62
5.2
MONOCYTES_63
5.1
MONOCYTES_64
5.0
MONOCYTES_65
4.9
MONOCYTES_66
4.9
MONOCYTES_67
4.8
MONOCYTES_68
4.7
MONOCYTES_69
4.7
MONOCYTES_70
4.6
MONOCYTES_71
4.5
MONOCYTES_72
4.3
MONOCYTES_73
4.1
MONOCYTES_74
4.0
MONOCYTES_75
3.9
MONOCYTES_76
3.7
MONOCYTES_77
3.6
MONOCYTES_78
3.6
MONOCYTES_79
3.6
MONOCYTES_80
3.6
MONOCYTES_81
3.5
MONOCYTES_82
3.3
MONOCYTES_83
3.3
MONOCYTES_84
3.3
MONOCYTES_85
3.3
MONOCYTES_86
3.2
MONOCYTES_87
3.1
MONOCYTES_88
3.0
MONOCYTES_89
2.8
MONOCYTES_90
2.7
MONOCYTES_91
1.8
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Non-classical monocyte TPM: 79.9
Samples: 90
Max TPM: 249.3
Min TPM: 20.3
M2_1
249.3
M2_2
167.7
M2_3
164.3
M2_4
145.3
M2_5
135.6
M2_6
133.1
M2_7
131.6
M2_8
127.0
M2_9
126.4
M2_10
120.6
M2_11
113.6
M2_12
113.3
M2_13
111.7
M2_14
110.5
M2_15
108.5
M2_16
106.9
M2_17
105.8
M2_18
105.7
M2_19
105.2
M2_20
103.8
M2_21
103.3
M2_22
103.2
M2_23
102.1
M2_24
101.0
M2_25
100.9
M2_26
99.6
M2_27
99.2
M2_28
92.4
M2_29
92.3
M2_30
91.9
M2_31
89.7
M2_32
88.4
M2_33
84.9
M2_34
84.4
M2_35
83.8
M2_36
81.6
M2_37
79.3
M2_38
78.8
M2_39
77.8
M2_40
77.3
M2_41
76.7
M2_42
76.4
M2_43
74.5
M2_44
74.3
M2_45
74.1
M2_46
73.8
M2_47
72.6
M2_48
71.2
M2_49
71.1
M2_50
70.7
M2_51
69.8
M2_52
65.5
M2_53
65.1
M2_54
64.0
M2_55
63.5
M2_56
63.0
M2_57
61.8
M2_58
61.6
M2_59
61.2
M2_60
61.0
M2_61
60.5
M2_62
58.9
M2_63
58.7
M2_64
58.2
M2_65
57.8
M2_66
57.5
M2_67
56.3
M2_68
55.9
M2_69
53.4
M2_70
53.0
M2_71
52.6
M2_72
52.1
M2_73
51.8
M2_74
51.5
M2_75
51.3
M2_76
47.3
M2_77
46.2
M2_78
45.3
M2_79
43.8
M2_80
43.4
M2_81
42.7
M2_82
42.6
M2_83
41.3
M2_84
40.4
M2_85
38.7
M2_86
38.4
M2_87
38.1
M2_88
30.8
M2_89
29.8
M2_90
20.3
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