A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
18.4
nTPM
Monaco:
51.3
nTPM
Schmiedel:
24.0
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
18.4
HPA sample
nTPM
NK-cell nTPM: 18.4
Samples: 6
Max nTPM: 28.2
Min nTPM: 13.3
P10809_1013
18.9
P10809_1033
13.3
P10809_1052
18.8
P10809_1071
15.2
P10809_1093
15.7
P10809_1103
28.2
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
51.3
Monaco sample
nTPM
NK-cell nTPM: 51.3
Samples: 4
Max nTPM: 54.2
Min nTPM: 45.9
RHH5316_R3683
54.2
RHH5224_R3596
45.9
RHH5253_R3625
52.7
RHH5282_R3654
52.5
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
24.0
Schmiedel sample id
TPM
NK-cell TPM: 24.0
Samples: 90
Max TPM: 35.9
Min TPM: 8.8
NK_1
35.9
NK_2
33.4
NK_3
33.0
NK_4
32.9
NK_5
31.9
NK_6
31.4
NK_7
30.7
NK_8
30.3
NK_9
29.9
NK_10
29.8
NK_11
28.8
NK_12
28.6
NK_13
28.3
NK_14
27.8
NK_15
27.7
NK_16
27.6
NK_17
27.4
NK_18
27.2
NK_19
27.2
NK_20
27.0
NK_21
27.0
NK_22
26.8
NK_23
26.8
NK_24
26.5
NK_25
26.2
NK_26
26.0
NK_27
25.8
NK_28
25.7
NK_29
25.4
NK_30
25.4
NK_31
25.3
NK_32
25.1
NK_33
25.1
NK_34
25.1
NK_35
25.0
NK_36
24.9
NK_37
24.9
NK_38
24.8
NK_39
24.3
NK_40
24.3
NK_41
24.1
NK_42
23.7
NK_43
23.6
NK_44
23.6
NK_45
23.4
NK_46
23.4
NK_47
23.4
NK_48
23.2
NK_49
23.1
NK_50
23.0
NK_51
23.0
NK_52
22.9
NK_53
22.9
NK_54
22.9
NK_55
22.8
NK_56
22.7
NK_57
22.6
NK_58
22.6
NK_59
22.5
NK_60
22.5
NK_61
22.4
NK_62
22.4
NK_63
22.2
NK_64
22.0
NK_65
21.9
NK_66
21.7
NK_67
21.7
NK_68
21.6
NK_69
21.5
NK_70
20.6
NK_71
20.6
NK_72
20.5
NK_73
20.4
NK_74
20.2
NK_75
20.2
NK_76
20.2
NK_77
20.0
NK_78
19.9
NK_79
19.5
NK_80
19.4
NK_81
19.2
NK_82
19.2
NK_83
19.1
NK_84
19.0
NK_85
18.5
NK_86
17.0
NK_87
16.7
NK_88
16.7
NK_89
16.3
NK_90
8.8
Show allShow less
We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.