A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
33.5
nTPM
Monaco:
93.3
nTPM
Schmiedel:
33.6
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
33.5
HPA sample
nTPM
Classical monocyte nTPM: 24.2
Samples: 6
Max nTPM: 30.9
Min nTPM: 17.3
P10809_1003
17.3
P10809_1020
23.5
P10809_1039
26.0
P10809_1058
22.5
P10809_1080
30.9
P10809_1107
24.8
Intermediate monocyte nTPM: 31.4
Samples: 6
Max nTPM: 41.6
Min nTPM: 26.0
P10809_1004
29.3
P10809_1023
29.5
P10809_1042
26.0
P10809_1061
41.6
P10809_1081
29.9
P10809_1108
32.2
Non-classical monocyte nTPM: 33.5
Samples: 5
Max nTPM: 54.5
Min nTPM: 24.8
P10809_1005
24.8
P10809_1053
28.7
P10809_1072
54.5
P10809_1082
30.5
P10809_1109
29.2
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
93.3
Monaco sample
nTPM
Classical monocyte nTPM: 76.6
Samples: 4
Max nTPM: 144.0
Min nTPM: 38.5
RHH5313_R3680
62.6
RHH5221_R3593
144.0
RHH5250_R3622
38.5
RHH5279_R3651
61.1
Intermediate monocyte nTPM: 93.3
Samples: 4
Max nTPM: 125.0
Min nTPM: 54.8
RHH5314_R3681
91.8
RHH5222_R3594
125.0
RHH5251_R3623
54.8
RHH5280_R3652
101.6
Non-classical monocyte nTPM: 91.6
Samples: 4
Max nTPM: 114.0
Min nTPM: 80.1
RHH5315_R3682
80.1
RHH5223_R3595
114.0
RHH5252_R3624
86.7
RHH5281_R3653
85.5
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
33.6
Schmiedel sample id
TPM
Classical monocyte TPM: 22.9
Samples: 91
Max TPM: 40.5
Min TPM: 13.0
MONOCYTES_1
40.5
MONOCYTES_2
34.3
MONOCYTES_3
33.9
MONOCYTES_4
32.4
MONOCYTES_5
31.8
MONOCYTES_6
31.7
MONOCYTES_7
31.3
MONOCYTES_8
30.7
MONOCYTES_9
30.1
MONOCYTES_10
28.6
MONOCYTES_11
27.9
MONOCYTES_12
27.8
MONOCYTES_13
27.3
MONOCYTES_14
26.9
MONOCYTES_15
26.9
MONOCYTES_16
26.7
MONOCYTES_17
26.5
MONOCYTES_18
26.1
MONOCYTES_19
26.0
MONOCYTES_20
26.0
MONOCYTES_21
25.8
MONOCYTES_22
25.6
MONOCYTES_23
25.6
MONOCYTES_24
25.5
MONOCYTES_25
25.4
MONOCYTES_26
25.3
MONOCYTES_27
25.0
MONOCYTES_28
24.9
MONOCYTES_29
24.7
MONOCYTES_30
24.7
MONOCYTES_31
24.6
MONOCYTES_32
24.3
MONOCYTES_33
24.2
MONOCYTES_34
23.9
MONOCYTES_35
23.2
MONOCYTES_36
23.1
MONOCYTES_37
23.1
MONOCYTES_38
22.9
MONOCYTES_39
22.8
MONOCYTES_40
22.8
MONOCYTES_41
22.5
MONOCYTES_42
22.5
MONOCYTES_43
22.4
MONOCYTES_44
22.3
MONOCYTES_45
22.3
MONOCYTES_46
22.3
MONOCYTES_47
22.1
MONOCYTES_48
22.1
MONOCYTES_49
22.0
MONOCYTES_50
21.9
MONOCYTES_51
21.7
MONOCYTES_52
21.5
MONOCYTES_53
21.5
MONOCYTES_54
21.5
MONOCYTES_55
21.4
MONOCYTES_56
21.3
MONOCYTES_57
21.2
MONOCYTES_58
20.6
MONOCYTES_59
20.6
MONOCYTES_60
20.4
MONOCYTES_61
20.4
MONOCYTES_62
20.3
MONOCYTES_63
20.3
MONOCYTES_64
20.3
MONOCYTES_65
20.2
MONOCYTES_66
20.1
MONOCYTES_67
20.0
MONOCYTES_68
20.0
MONOCYTES_69
20.0
MONOCYTES_70
19.8
MONOCYTES_71
19.7
MONOCYTES_72
19.6
MONOCYTES_73
19.1
MONOCYTES_74
18.9
MONOCYTES_75
18.9
MONOCYTES_76
18.5
MONOCYTES_77
18.4
MONOCYTES_78
17.8
MONOCYTES_79
17.7
MONOCYTES_80
17.3
MONOCYTES_81
17.3
MONOCYTES_82
17.2
MONOCYTES_83
17.1
MONOCYTES_84
17.1
MONOCYTES_85
17.1
MONOCYTES_86
16.1
MONOCYTES_87
16.0
MONOCYTES_88
15.8
MONOCYTES_89
15.7
MONOCYTES_90
15.5
MONOCYTES_91
13.0
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Non-classical monocyte TPM: 33.6
Samples: 90
Max TPM: 55.2
Min TPM: 18.9
M2_1
55.2
M2_2
54.8
M2_3
53.9
M2_4
47.4
M2_5
47.0
M2_6
46.4
M2_7
45.8
M2_8
45.3
M2_9
45.0
M2_10
43.5
M2_11
43.5
M2_12
43.3
M2_13
40.4
M2_14
40.2
M2_15
39.9
M2_16
39.2
M2_17
39.1
M2_18
39.0
M2_19
38.0
M2_20
37.2
M2_21
37.1
M2_22
37.0
M2_23
36.9
M2_24
36.9
M2_25
36.3
M2_26
36.2
M2_27
35.8
M2_28
35.3
M2_29
35.3
M2_30
34.8
M2_31
34.7
M2_32
34.6
M2_33
34.6
M2_34
34.4
M2_35
34.3
M2_36
34.3
M2_37
34.2
M2_38
34.1
M2_39
34.1
M2_40
34.0
M2_41
33.7
M2_42
33.4
M2_43
33.1
M2_44
33.0
M2_45
32.8
M2_46
32.4
M2_47
32.3
M2_48
32.2
M2_49
31.8
M2_50
31.8
M2_51
31.6
M2_52
31.6
M2_53
31.5
M2_54
31.4
M2_55
31.3
M2_56
31.3
M2_57
31.1
M2_58
30.9
M2_59
30.8
M2_60
30.2
M2_61
30.0
M2_62
29.9
M2_63
29.9
M2_64
29.5
M2_65
29.4
M2_66
29.2
M2_67
29.2
M2_68
28.9
M2_69
28.8
M2_70
28.0
M2_71
27.7
M2_72
27.7
M2_73
27.0
M2_74
27.0
M2_75
26.9
M2_76
26.9
M2_77
26.6
M2_78
26.5
M2_79
26.1
M2_80
25.8
M2_81
25.8
M2_82
25.6
M2_83
24.9
M2_84
24.8
M2_85
24.2
M2_86
24.2
M2_87
23.9
M2_88
23.5
M2_89
23.3
M2_90
18.9
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