A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
32.8
nTPM
Monaco:
214.3
nTPM
Schmiedel:
120.1
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
32.8
HPA sample
nTPM
Memory B-cell nTPM: 29.0
Samples: 6
Max nTPM: 52.3
Min nTPM: 21.1
P10809_1017
26.6
P10809_1025
24.8
P10809_1044
52.3
P10809_1063
24.3
P10809_1092
21.1
P10809_1105
25.1
Naive B-cell nTPM: 32.8
Samples: 6
Max nTPM: 45.2
Min nTPM: 26.5
P10809_1011
45.2
P10809_1029
35.0
P10809_1048
26.5
P10809_1067
28.2
P10809_1091
29.5
P10809_1104
32.5
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
214.3
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 207.5
Samples: 4
Max nTPM: 262.4
Min nTPM: 131.6
RHH5310_R3677
216.7
RHH5218_R3590
219.3
RHH5247_R3619
131.6
RHH5276_R3648
262.4
Naive B-cell nTPM: 163.1
Samples: 4
Max nTPM: 180.0
Min nTPM: 147.7
RHH5308_R3675
168.2
RHH5216_R3588
156.5
RHH5245_R3617
147.7
RHH5274_R3646
180.0
Non-switched memory B-cell nTPM: 214.3
Samples: 4
Max nTPM: 251.0
Min nTPM: 198.2
RHH5309_R3676
208.3
RHH5217_R3589
199.7
RHH5246_R3618
251.0
RHH5275_R3647
198.2
Plasmablast nTPM: 56.8
Samples: 4
Max nTPM: 64.0
Min nTPM: 48.1
RHH5312_R3679
64.0
RHH5220_R3592
61.8
RHH5249_R3621
48.1
RHH5278_R3650
53.1
Switched memory B-cell nTPM: 174.4
Samples: 4
Max nTPM: 202.5
Min nTPM: 158.9
RHH5311_R3678
167.4
RHH5219_R3591
168.9
RHH5248_R3620
158.9
RHH5277_R3649
202.5
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
120.1
Schmiedel sample id
TPM
Naive B-cell TPM: 120.1
Samples: 91
Max TPM: 170.8
Min TPM: 63.8
B_CELL_NAIVE_1
170.8
B_CELL_NAIVE_2
156.7
B_CELL_NAIVE_3
153.5
B_CELL_NAIVE_4
152.7
B_CELL_NAIVE_5
152.4
B_CELL_NAIVE_6
151.6
B_CELL_NAIVE_7
151.2
B_CELL_NAIVE_8
149.6
B_CELL_NAIVE_9
149.1
B_CELL_NAIVE_10
149.0
B_CELL_NAIVE_11
148.9
B_CELL_NAIVE_12
148.9
B_CELL_NAIVE_13
148.7
B_CELL_NAIVE_14
147.8
B_CELL_NAIVE_15
147.0
B_CELL_NAIVE_16
144.1
B_CELL_NAIVE_17
143.1
B_CELL_NAIVE_18
143.1
B_CELL_NAIVE_19
142.8
B_CELL_NAIVE_20
142.6
B_CELL_NAIVE_21
141.3
B_CELL_NAIVE_22
140.8
B_CELL_NAIVE_23
140.0
B_CELL_NAIVE_24
139.2
B_CELL_NAIVE_25
139.1
B_CELL_NAIVE_26
138.4
B_CELL_NAIVE_27
138.3
B_CELL_NAIVE_28
138.2
B_CELL_NAIVE_29
137.7
B_CELL_NAIVE_30
136.1
B_CELL_NAIVE_31
136.1
B_CELL_NAIVE_32
135.6
B_CELL_NAIVE_33
135.5
B_CELL_NAIVE_34
134.0
B_CELL_NAIVE_35
132.8
B_CELL_NAIVE_36
132.2
B_CELL_NAIVE_37
131.1
B_CELL_NAIVE_38
129.3
B_CELL_NAIVE_39
128.5
B_CELL_NAIVE_40
127.9
B_CELL_NAIVE_41
126.8
B_CELL_NAIVE_42
126.3
B_CELL_NAIVE_43
123.6
B_CELL_NAIVE_44
123.5
B_CELL_NAIVE_45
122.4
B_CELL_NAIVE_46
122.0
B_CELL_NAIVE_47
121.3
B_CELL_NAIVE_48
121.2
B_CELL_NAIVE_49
120.7
B_CELL_NAIVE_50
118.6
B_CELL_NAIVE_51
118.4
B_CELL_NAIVE_52
118.0
B_CELL_NAIVE_53
116.8
B_CELL_NAIVE_54
116.5
B_CELL_NAIVE_55
116.1
B_CELL_NAIVE_56
115.1
B_CELL_NAIVE_57
114.2
B_CELL_NAIVE_58
113.7
B_CELL_NAIVE_59
113.1
B_CELL_NAIVE_60
112.2
B_CELL_NAIVE_61
112.2
B_CELL_NAIVE_62
112.2
B_CELL_NAIVE_63
111.7
B_CELL_NAIVE_64
110.9
B_CELL_NAIVE_65
110.5
B_CELL_NAIVE_66
110.1
B_CELL_NAIVE_67
106.5
B_CELL_NAIVE_68
105.2
B_CELL_NAIVE_69
101.7
B_CELL_NAIVE_70
99.4
B_CELL_NAIVE_71
97.4
B_CELL_NAIVE_72
96.2
B_CELL_NAIVE_73
96.2
B_CELL_NAIVE_74
93.2
B_CELL_NAIVE_75
91.7
B_CELL_NAIVE_76
90.6
B_CELL_NAIVE_77
89.9
B_CELL_NAIVE_78
89.4
B_CELL_NAIVE_79
87.3
B_CELL_NAIVE_80
86.5
B_CELL_NAIVE_81
85.7
B_CELL_NAIVE_82
85.7
B_CELL_NAIVE_83
83.6
B_CELL_NAIVE_84
83.0
B_CELL_NAIVE_85
82.7
B_CELL_NAIVE_86
81.1
B_CELL_NAIVE_87
75.9
B_CELL_NAIVE_88
66.3
B_CELL_NAIVE_89
66.0
B_CELL_NAIVE_90
65.8
B_CELL_NAIVE_91
63.8
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