A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
95.1
nTPM
Monaco:
430.6
nTPM
Schmiedel:
186.9
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
95.1
HPA sample
nTPM
Classical monocyte nTPM: 27.9
Samples: 6
Max nTPM: 40.5
Min nTPM: 16.2
P10809_1003
40.5
P10809_1020
26.6
P10809_1039
16.2
P10809_1058
24.6
P10809_1080
26.4
P10809_1107
33.0
Intermediate monocyte nTPM: 51.1
Samples: 6
Max nTPM: 62.6
Min nTPM: 32.5
P10809_1004
62.6
P10809_1023
51.5
P10809_1042
59.8
P10809_1061
39.7
P10809_1081
32.5
P10809_1108
60.3
Non-classical monocyte nTPM: 95.1
Samples: 5
Max nTPM: 207.1
Min nTPM: 54.2
P10809_1005
84.4
P10809_1053
59.1
P10809_1072
207.1
P10809_1082
54.2
P10809_1109
70.7
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
430.6
Monaco sample
nTPM
Classical monocyte nTPM: 211.0
Samples: 4
Max nTPM: 246.5
Min nTPM: 190.5
RHH5313_R3680
208.1
RHH5221_R3593
246.5
RHH5250_R3622
190.5
RHH5279_R3651
199.0
Intermediate monocyte nTPM: 320.6
Samples: 4
Max nTPM: 350.8
Min nTPM: 289.7
RHH5314_R3681
350.8
RHH5222_R3594
323.1
RHH5251_R3623
289.7
RHH5280_R3652
318.6
Non-classical monocyte nTPM: 430.5
Samples: 4
Max nTPM: 514.1
Min nTPM: 372.7
RHH5315_R3682
514.1
RHH5223_R3595
372.7
RHH5252_R3624
389.9
RHH5281_R3653
445.5
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
186.9
Schmiedel sample id
TPM
Classical monocyte TPM: 83.0
Samples: 91
Max TPM: 131.9
Min TPM: 43.7
MONOCYTES_1
131.9
MONOCYTES_2
124.7
MONOCYTES_3
123.9
MONOCYTES_4
120.5
MONOCYTES_5
116.5
MONOCYTES_6
114.2
MONOCYTES_7
113.7
MONOCYTES_8
109.1
MONOCYTES_9
106.7
MONOCYTES_10
104.6
MONOCYTES_11
104.4
MONOCYTES_12
103.8
MONOCYTES_13
102.6
MONOCYTES_14
101.5
MONOCYTES_15
100.7
MONOCYTES_16
100.1
MONOCYTES_17
99.9
MONOCYTES_18
99.6
MONOCYTES_19
98.7
MONOCYTES_20
97.8
MONOCYTES_21
95.4
MONOCYTES_22
93.7
MONOCYTES_23
93.6
MONOCYTES_24
93.6
MONOCYTES_25
92.7
MONOCYTES_26
92.7
MONOCYTES_27
92.6
MONOCYTES_28
92.5
MONOCYTES_29
92.0
MONOCYTES_30
91.4
MONOCYTES_31
90.8
MONOCYTES_32
90.7
MONOCYTES_33
90.5
MONOCYTES_34
89.4
MONOCYTES_35
89.0
MONOCYTES_36
88.5
MONOCYTES_37
88.4
MONOCYTES_38
87.0
MONOCYTES_39
86.5
MONOCYTES_40
85.5
MONOCYTES_41
85.5
MONOCYTES_42
85.3
MONOCYTES_43
84.7
MONOCYTES_44
84.6
MONOCYTES_45
83.8
MONOCYTES_46
82.8
MONOCYTES_47
81.1
MONOCYTES_48
80.2
MONOCYTES_49
78.9
MONOCYTES_50
78.9
MONOCYTES_51
78.7
MONOCYTES_52
78.3
MONOCYTES_53
78.3
MONOCYTES_54
77.9
MONOCYTES_55
76.8
MONOCYTES_56
75.3
MONOCYTES_57
74.0
MONOCYTES_58
73.9
MONOCYTES_59
73.2
MONOCYTES_60
72.7
MONOCYTES_61
72.1
MONOCYTES_62
72.1
MONOCYTES_63
71.8
MONOCYTES_64
71.6
MONOCYTES_65
71.6
MONOCYTES_66
71.5
MONOCYTES_67
71.1
MONOCYTES_68
71.0
MONOCYTES_69
69.1
MONOCYTES_70
69.0
MONOCYTES_71
68.7
MONOCYTES_72
68.2
MONOCYTES_73
67.4
MONOCYTES_74
66.5
MONOCYTES_75
65.4
MONOCYTES_76
65.1
MONOCYTES_77
65.1
MONOCYTES_78
65.0
MONOCYTES_79
63.4
MONOCYTES_80
63.0
MONOCYTES_81
62.1
MONOCYTES_82
61.5
MONOCYTES_83
58.9
MONOCYTES_84
58.7
MONOCYTES_85
58.0
MONOCYTES_86
57.3
MONOCYTES_87
54.5
MONOCYTES_88
52.9
MONOCYTES_89
52.7
MONOCYTES_90
50.4
MONOCYTES_91
43.7
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Non-classical monocyte TPM: 186.9
Samples: 90
Max TPM: 274.3
Min TPM: 105.5
M2_1
274.3
M2_2
270.3
M2_3
262.0
M2_4
252.0
M2_5
249.9
M2_6
242.9
M2_7
241.8
M2_8
238.0
M2_9
235.3
M2_10
232.7
M2_11
231.4
M2_12
230.0
M2_13
227.9
M2_14
225.2
M2_15
224.9
M2_16
223.7
M2_17
222.6
M2_18
221.4
M2_19
218.9
M2_20
217.1
M2_21
216.7
M2_22
215.3
M2_23
213.2
M2_24
213.1
M2_25
212.6
M2_26
212.2
M2_27
211.9
M2_28
210.5
M2_29
209.2
M2_30
209.0
M2_31
206.3
M2_32
206.1
M2_33
206.0
M2_34
200.7
M2_35
200.5
M2_36
196.5
M2_37
195.7
M2_38
195.5
M2_39
194.2
M2_40
193.9
M2_41
193.3
M2_42
192.2
M2_43
191.1
M2_44
189.8
M2_45
189.0
M2_46
187.5
M2_47
187.2
M2_48
186.6
M2_49
185.6
M2_50
185.2
M2_51
184.5
M2_52
182.5
M2_53
182.0
M2_54
180.2
M2_55
179.7
M2_56
179.3
M2_57
173.9
M2_58
173.2
M2_59
173.0
M2_60
172.8
M2_61
170.3
M2_62
170.0
M2_63
170.0
M2_64
169.2
M2_65
160.3
M2_66
159.7
M2_67
159.5
M2_68
155.1
M2_69
153.9
M2_70
152.4
M2_71
150.8
M2_72
150.0
M2_73
146.4
M2_74
145.4
M2_75
144.7
M2_76
142.9
M2_77
142.3
M2_78
141.4
M2_79
141.2
M2_80
139.5
M2_81
135.9
M2_82
134.3
M2_83
132.3
M2_84
128.7
M2_85
122.0
M2_86
118.0
M2_87
115.5
M2_88
115.5
M2_89
114.3
M2_90
105.5
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