A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
36.8
nTPM
Monaco:
281.3
nTPM
Schmiedel:
234.8
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
36.8
HPA sample
nTPM
Memory B-cell nTPM: 36.8
Samples: 6
Max nTPM: 49.7
Min nTPM: 22.2
P10809_1017
28.3
P10809_1025
32.1
P10809_1044
41.8
P10809_1063
49.7
P10809_1092
46.6
P10809_1105
22.2
Naive B-cell nTPM: 33.1
Samples: 6
Max nTPM: 48.0
Min nTPM: 20.4
P10809_1011
20.4
P10809_1029
34.4
P10809_1048
48.0
P10809_1067
38.3
P10809_1091
34.7
P10809_1104
22.6
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
281.3
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 223.7
Samples: 4
Max nTPM: 273.5
Min nTPM: 110.7
RHH5310_R3677
110.7
RHH5218_R3590
273.5
RHH5247_R3619
254.7
RHH5276_R3648
255.9
Naive B-cell nTPM: 243.8
Samples: 4
Max nTPM: 311.5
Min nTPM: 168.2
RHH5308_R3675
212.3
RHH5216_R3588
168.2
RHH5245_R3617
283.0
RHH5274_R3646
311.5
Non-switched memory B-cell nTPM: 258.5
Samples: 4
Max nTPM: 318.4
Min nTPM: 127.9
RHH5309_R3676
127.9
RHH5217_R3589
318.4
RHH5246_R3618
275.5
RHH5275_R3647
312.1
Plasmablast nTPM: 245.9
Samples: 4
Max nTPM: 271.6
Min nTPM: 218.5
RHH5312_R3679
241.3
RHH5220_R3592
218.5
RHH5249_R3621
252.2
RHH5278_R3650
271.6
Switched memory B-cell nTPM: 281.3
Samples: 4
Max nTPM: 402.5
Min nTPM: 102.9
RHH5311_R3678
102.9
RHH5219_R3591
312.2
RHH5248_R3620
402.5
RHH5277_R3649
307.7
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
234.8
Schmiedel sample id
TPM
Naive B-cell TPM: 234.8
Samples: 91
Max TPM: 430.3
Min TPM: 153.9
B_CELL_NAIVE_1
430.3
B_CELL_NAIVE_2
381.2
B_CELL_NAIVE_3
349.1
B_CELL_NAIVE_4
343.2
B_CELL_NAIVE_5
328.7
B_CELL_NAIVE_6
323.9
B_CELL_NAIVE_7
321.8
B_CELL_NAIVE_8
311.3
B_CELL_NAIVE_9
300.9
B_CELL_NAIVE_10
293.8
B_CELL_NAIVE_11
292.6
B_CELL_NAIVE_12
292.6
B_CELL_NAIVE_13
290.4
B_CELL_NAIVE_14
283.5
B_CELL_NAIVE_15
280.6
B_CELL_NAIVE_16
271.2
B_CELL_NAIVE_17
268.3
B_CELL_NAIVE_18
266.5
B_CELL_NAIVE_19
266.4
B_CELL_NAIVE_20
266.0
B_CELL_NAIVE_21
263.7
B_CELL_NAIVE_22
249.1
B_CELL_NAIVE_23
246.7
B_CELL_NAIVE_24
244.2
B_CELL_NAIVE_25
244.0
B_CELL_NAIVE_26
239.8
B_CELL_NAIVE_27
238.9
B_CELL_NAIVE_28
238.2
B_CELL_NAIVE_29
236.7
B_CELL_NAIVE_30
235.0
B_CELL_NAIVE_31
233.9
B_CELL_NAIVE_32
233.7
B_CELL_NAIVE_33
233.0
B_CELL_NAIVE_34
232.8
B_CELL_NAIVE_35
231.8
B_CELL_NAIVE_36
231.7
B_CELL_NAIVE_37
231.4
B_CELL_NAIVE_38
231.1
B_CELL_NAIVE_39
230.9
B_CELL_NAIVE_40
230.7
B_CELL_NAIVE_41
230.1
B_CELL_NAIVE_42
229.5
B_CELL_NAIVE_43
229.1
B_CELL_NAIVE_44
227.4
B_CELL_NAIVE_45
227.4
B_CELL_NAIVE_46
226.7
B_CELL_NAIVE_47
226.0
B_CELL_NAIVE_48
225.7
B_CELL_NAIVE_49
224.0
B_CELL_NAIVE_50
223.6
B_CELL_NAIVE_51
223.2
B_CELL_NAIVE_52
222.3
B_CELL_NAIVE_53
220.8
B_CELL_NAIVE_54
219.3
B_CELL_NAIVE_55
219.1
B_CELL_NAIVE_56
218.5
B_CELL_NAIVE_57
216.5
B_CELL_NAIVE_58
215.7
B_CELL_NAIVE_59
215.4
B_CELL_NAIVE_60
212.8
B_CELL_NAIVE_61
211.9
B_CELL_NAIVE_62
209.5
B_CELL_NAIVE_63
209.1
B_CELL_NAIVE_64
207.8
B_CELL_NAIVE_65
205.1
B_CELL_NAIVE_66
205.0
B_CELL_NAIVE_67
205.0
B_CELL_NAIVE_68
204.6
B_CELL_NAIVE_69
202.8
B_CELL_NAIVE_70
202.7
B_CELL_NAIVE_71
201.8
B_CELL_NAIVE_72
201.6
B_CELL_NAIVE_73
200.3
B_CELL_NAIVE_74
200.1
B_CELL_NAIVE_75
199.8
B_CELL_NAIVE_76
199.4
B_CELL_NAIVE_77
197.9
B_CELL_NAIVE_78
197.6
B_CELL_NAIVE_79
196.0
B_CELL_NAIVE_80
187.6
B_CELL_NAIVE_81
187.0
B_CELL_NAIVE_82
185.6
B_CELL_NAIVE_83
185.3
B_CELL_NAIVE_84
184.8
B_CELL_NAIVE_85
183.9
B_CELL_NAIVE_86
181.2
B_CELL_NAIVE_87
179.2
B_CELL_NAIVE_88
174.4
B_CELL_NAIVE_89
170.4
B_CELL_NAIVE_90
159.0
B_CELL_NAIVE_91
153.9
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