A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
35.5
nTPM
Monaco:
247.0
nTPM
Schmiedel:
131.5
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
35.5
HPA sample
nTPM
Classical monocyte nTPM: 27.2
Samples: 6
Max nTPM: 31.7
Min nTPM: 16.9
P10809_1003
27.3
P10809_1020
29.8
P10809_1039
31.7
P10809_1058
30.4
P10809_1080
26.8
P10809_1107
16.9
Intermediate monocyte nTPM: 33.2
Samples: 6
Max nTPM: 64.6
Min nTPM: 14.8
P10809_1004
29.6
P10809_1023
28.1
P10809_1042
30.8
P10809_1061
64.6
P10809_1081
31.4
P10809_1108
14.8
Non-classical monocyte nTPM: 35.5
Samples: 5
Max nTPM: 70.1
Min nTPM: 14.0
P10809_1005
31.8
P10809_1053
27.9
P10809_1072
70.1
P10809_1082
33.7
P10809_1109
14.0
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
247.0
Monaco sample
nTPM
Classical monocyte nTPM: 240.7
Samples: 4
Max nTPM: 298.8
Min nTPM: 186.0
RHH5313_R3680
186.0
RHH5221_R3593
195.8
RHH5250_R3622
298.8
RHH5279_R3651
282.1
Intermediate monocyte nTPM: 209.4
Samples: 4
Max nTPM: 257.0
Min nTPM: 149.5
RHH5314_R3681
174.3
RHH5222_R3594
149.5
RHH5251_R3623
256.7
RHH5280_R3652
257.0
Non-classical monocyte nTPM: 247.0
Samples: 4
Max nTPM: 345.3
Min nTPM: 190.4
RHH5315_R3682
202.0
RHH5223_R3595
190.4
RHH5252_R3624
345.3
RHH5281_R3653
250.3
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
131.5
Schmiedel sample id
TPM
Classical monocyte TPM: 131.5
Samples: 91
Max TPM: 195.9
Min TPM: 95.8
MONOCYTES_1
195.9
MONOCYTES_2
167.1
MONOCYTES_3
166.4
MONOCYTES_4
165.7
MONOCYTES_5
163.2
MONOCYTES_6
162.8
MONOCYTES_7
161.1
MONOCYTES_8
157.3
MONOCYTES_9
156.3
MONOCYTES_10
154.4
MONOCYTES_11
154.2
MONOCYTES_12
153.2
MONOCYTES_13
152.9
MONOCYTES_14
152.9
MONOCYTES_15
152.3
MONOCYTES_16
152.1
MONOCYTES_17
151.6
MONOCYTES_18
150.3
MONOCYTES_19
147.1
MONOCYTES_20
145.7
MONOCYTES_21
145.4
MONOCYTES_22
144.2
MONOCYTES_23
143.8
MONOCYTES_24
142.3
MONOCYTES_25
142.1
MONOCYTES_26
142.1
MONOCYTES_27
141.2
MONOCYTES_28
139.5
MONOCYTES_29
139.5
MONOCYTES_30
139.1
MONOCYTES_31
138.6
MONOCYTES_32
137.9
MONOCYTES_33
137.7
MONOCYTES_34
136.7
MONOCYTES_35
136.0
MONOCYTES_36
134.3
MONOCYTES_37
133.2
MONOCYTES_38
132.3
MONOCYTES_39
131.4
MONOCYTES_40
131.1
MONOCYTES_41
130.7
MONOCYTES_42
130.4
MONOCYTES_43
130.0
MONOCYTES_44
129.3
MONOCYTES_45
128.8
MONOCYTES_46
128.7
MONOCYTES_47
128.3
MONOCYTES_48
128.2
MONOCYTES_49
126.8
MONOCYTES_50
126.6
MONOCYTES_51
126.6
MONOCYTES_52
126.2
MONOCYTES_53
125.6
MONOCYTES_54
125.3
MONOCYTES_55
124.8
MONOCYTES_56
124.5
MONOCYTES_57
123.7
MONOCYTES_58
123.5
MONOCYTES_59
122.9
MONOCYTES_60
122.8
MONOCYTES_61
122.6
MONOCYTES_62
121.5
MONOCYTES_63
121.3
MONOCYTES_64
121.0
MONOCYTES_65
120.9
MONOCYTES_66
120.2
MONOCYTES_67
118.7
MONOCYTES_68
118.6
MONOCYTES_69
118.1
MONOCYTES_70
117.5
MONOCYTES_71
116.2
MONOCYTES_72
115.4
MONOCYTES_73
115.1
MONOCYTES_74
115.0
MONOCYTES_75
114.9
MONOCYTES_76
114.9
MONOCYTES_77
114.7
MONOCYTES_78
114.6
MONOCYTES_79
113.5
MONOCYTES_80
112.9
MONOCYTES_81
112.3
MONOCYTES_82
111.3
MONOCYTES_83
110.3
MONOCYTES_84
110.0
MONOCYTES_85
106.2
MONOCYTES_86
106.1
MONOCYTES_87
105.4
MONOCYTES_88
103.2
MONOCYTES_89
99.0
MONOCYTES_90
98.5
MONOCYTES_91
95.8
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Non-classical monocyte TPM: 121.3
Samples: 90
Max TPM: 196.1
Min TPM: 58.5
M2_1
196.1
M2_2
189.5
M2_3
187.1
M2_4
184.8
M2_5
177.4
M2_6
170.6
M2_7
162.9
M2_8
158.3
M2_9
153.3
M2_10
152.9
M2_11
151.9
M2_12
151.8
M2_13
151.3
M2_14
151.2
M2_15
149.7
M2_16
146.8
M2_17
146.2
M2_18
145.4
M2_19
141.5
M2_20
140.0
M2_21
139.4
M2_22
137.7
M2_23
137.4
M2_24
137.2
M2_25
136.6
M2_26
136.1
M2_27
135.5
M2_28
135.1
M2_29
134.7
M2_30
134.7
M2_31
133.5
M2_32
132.5
M2_33
131.0
M2_34
128.9
M2_35
126.1
M2_36
125.3
M2_37
121.7
M2_38
121.2
M2_39
120.7
M2_40
120.4
M2_41
119.7
M2_42
118.9
M2_43
117.9
M2_44
117.3
M2_45
116.8
M2_46
116.1
M2_47
115.7
M2_48
114.4
M2_49
114.1
M2_50
113.2
M2_51
112.8
M2_52
112.6
M2_53
112.5
M2_54
111.9
M2_55
110.6
M2_56
109.9
M2_57
109.1
M2_58
108.6
M2_59
108.5
M2_60
108.3
M2_61
107.6
M2_62
106.0
M2_63
106.0
M2_64
104.8
M2_65
102.8
M2_66
101.5
M2_67
100.6
M2_68
99.6
M2_69
99.3
M2_70
99.0
M2_71
98.6
M2_72
98.3
M2_73
98.2
M2_74
97.8
M2_75
96.9
M2_76
96.1
M2_77
94.7
M2_78
93.9
M2_79
92.5
M2_80
92.4
M2_81
90.1
M2_82
89.5
M2_83
88.1
M2_84
86.8
M2_85
86.2
M2_86
85.8
M2_87
85.1
M2_88
82.1
M2_89
75.0
M2_90
58.5
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