MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:14.7 nTPM
HPA Brain:81.5 nTPM
GTEx:14.7 nTPM
FANTOM5:0.9 Scaled Tags Per Million
Pig:23.9 nTPM
Mouse:38.9 nTPM
Allen mouse:5.6 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 81.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 25.9
2219 Male, age 76, both hemispheres 75.6
1833 Male, age 53, unknown 29.5
2586 Male, age 75, left hemisphere 26.9
1830 Male, age 51, unknown 25.9
1827 Male, age 72, unknown 23.8
2411 Female, age 72, unknown 20.2
1870 Female, age 42, unknown 16.3
2828 Female, age 72, unknown 14.3
2666 Male, age 74, left hemisphere 13.3
2019 Male, age 18, unknown 13.0
Dorsal raphe nucleus
nTPM: 20.0
1828 Male, age 53, unknown 23.5
2016 Female, age 72, unknown 23.3
2047 Male, age 72, unknown 21.8
2298 Female, age 72, unknown 18.0
2750 Male, age 76, both hemispheres 13.1
Inferior colliculus
nTPM: 60.4
1890 Male, age 53, unknown 78.5
2097 Female, age 72, unknown 71.6
2849 Male, age 72, unknown 47.4
1848 Female, age 42, unknown 44.4
Median raphe nucleus
nTPM: 15.0
2220 Male, age 76, midline 15.0
Periaquaductal grey, anterior
nTPM: 32.9
2502 Female, age 75, unknown 63.1
1947 Male, age 18, unknown 25.7
1795 Male, age 51, unknown 10.1
Periaquaductal grey, dorsal
nTPM: 22.6
2464 Female, age 72, unknown 26.7
1831 Male, age 72, unknown 26.5
1840 Male, age 53, unknown 24.9
2850 Male, age 76, both hemispheres 12.2
Periaquaductal grey, lateral
nTPM: 13.2
2140 Male, age 76, both hemispheres 16.1
2053 Male, age 18, unknown 14.9
2272 Male, age 74, both hemispheres 8.5
Pretectal area
nTPM: 11.7
2825 Male, age 18, unknown 23.9
2316 Male, age 76, right hemisphere 19.6
2407 Male, age 75, both hemispheres 17.5
2224 Female, age 72, unknown 13.1
2667 Female, age 75, unknown 9.6
2007 Male, age 72, unknown 8.9
1816 Male, age 51, unknown 8.6
1944 Female, age 72, unknown 7.5
1817 Female, age 42, unknown 7.1
2273 Male, age 74, both hemispheres 6.6
1815 Male, age 53, unknown 5.8
Red nucleus
nTPM: 30.4
1821 Female, age 72, unknown 52.0
2769 Male, age 72, unknown 41.7
2227 Male, age 72, unknown 41.2
1954 Female, age 42, unknown 37.5
1865 Male, age 51, unknown 31.5
1904 Male, age 53, unknown 30.4
2823 Male, age 76, right hemisphere 28.2
2584 Male, age 75, left hemisphere 25.1
2503 Female, age 72, unknown 24.8
2588 Male, age 74, left hemisphere 23.7
2725 Female, age 75, unknown 18.8
2785 Male, age 18, unknown 9.7
Substantia nigra
nTPM: 81.5
1916 Female, age 42, unknown 150.2
2699 Male, age 18, unknown 143.9
2665 Male, age 74, both hemispheres 108.8
1941 Male, age 53, unknown 89.7
1851 Male, age 51, unknown 86.5
2241 Male, age 72, unknown 82.3
2409 Female, age 72, unknown 59.3
2590 Female, age 75, unknown 36.1
2583 Male, age 75, right hemisphere 31.2
1889 Female, age 72, unknown 27.4
Superior colliculus
nTPM: 18.0
1895 Male, age 76, right hemisphere 37.6
2664 Male, age 75, both hemispheres 29.6
1839 Male, age 51, unknown 24.6
2668 Female, age 75, unknown 19.8
1796 Male, age 53, unknown 17.4
2587 Male, age 74, left hemisphere 16.1
2261 Male, age 18, unknown 13.5
2087 Female, age 72, unknown 11.9
1995 Male, age 72, unknown 5.5
1913 Female, age 42, unknown 4.1
Ventral tegmental area
nTPM: 50.5
1915 Female, age 42, unknown 82.2
2410 Female, age 72, unknown 68.4
2218 Male, age 76, both hemispheres 66.2
1942 Male, age 51, unknown 49.8
2021 Male, age 53, unknown 19.3
2223 Female, age 72, unknown 17.3

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 14.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 14.7
Samples: 183

Max nTPM: 64.4
Min nTPM: 0.1
Std nTPM: 14.8
Median nTPM: 8.5
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 64.4
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 62.1
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 59.3
GTEX-117XS-0011-R2b-SM-GI4VT 60-69 years, male 58.4
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 54.9
GTEX-13OW7-0011-R2b-SM-H6Q8E 50-59 years, male 54.5
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 54.5
GTEX-1N2EE-0011-R2a-SM-F649F 60-69 years, male 49.4
GTEX-13G51-0011-R2b-SM-5LZXS 60-69 years, male 45.6
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 45.4
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 44.9
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 0.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 0.9
FF:10158-103A5 76 years, female 0.9

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 23.9
Pig sample Sample description nTPM
Substantia nigra
nTPM: 21.7
Samples: 4

Max nTPM: 34.9
Min nTPM: 8.4
Sample A Female 29.9
Sample B Female 13.5
Sample C Male 34.9
Sample D Male 8.4
Midbrain
nTPM: 18.1
Samples: 4

Max nTPM: 33.4
Min nTPM: 9.7
Sample A Female 9.7
Sample B Female 12.7
Sample C Male 16.6
Sample D Male 33.4
Periaqueductal gray
nTPM: 10.4
Samples: 3

Max nTPM: 12.8
Min nTPM: 8.1
Sample B Female 10.3
Sample C Male 12.8
Sample D Male 8.1
Superior colliculi
nTPM: 23.9
Samples: 4

Max nTPM: 33.1
Min nTPM: 8.5
Sample A Female 33.1
Sample B Female 8.5
Sample C Male 22.5
Sample D Male 31.6

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 38.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 38.9
Samples: 4

Max nTPM: 42.7
Min nTPM: 32.6
Sample A Male 32.6
Sample B Male 41.0
Sample C Female 42.7
Sample D Female 39.3

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 5.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 5.6
69236610 Antisense, RP_050329_04_A08, Mouse strain C57BL/6J (56 days, male) 7.3
70560276 Antisense, RP_050329_04_A08, Mouse strain C57BL/6J (56 days, male) 5.7
77924344 Antisense, RP_070219_01_F10, Mouse strain C57BL/6J (56 days, male) 3.9

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